PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 138aa MW: 15415 Da PI: 4.7469

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G2491	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.6	1.5e-18	17	69	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + +g r +lg+f+tae+Aa+a+++a+ +++g+ Gh_D07G2491 17 RYRGVRRRP-WGKFAAEIRDSTRlGG--PRLWLGTFDTAEDAARAYDRAAFAMRGA 69 59*****.******433354..***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.6E-34	17	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-22	17	78	IPR016177	DNA-binding domain
Pfam	PF00847	2.4E-13	17	68	IPR001471	AP2/ERF domain
CDD	cd00018	4.31E-18	17	77	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.0E-30	17	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.433	17	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MEGDKNKKAG EGDSSIRYRG VRRRPWGKFA AEIRDSTRLG GPRLWLGTFD TAEDAARAYD 60 RAAFAMRGAS AILNFPDERM ASPTTNPPPS SSMASSSSSA IENAERKREH DTQVLELEYL 120 DDELLEQLLD FDNKDTKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-31	10	124	7	114	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615645	1e-146	JX615645.1 Gossypium hirsutum clone NBRI_GE59730 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016732607.1	5e-97	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	1e-36	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1U8N0G8	1e-95	A0A1U8N0G8_GOSHI; ethylene-responsive transcription factor ERF098-like
STRING	Gorai.001G252400.1	6e-64	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24897	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	1e-17	ethylene response factor 1

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]