PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0050
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 359aa    MW: 40141.8 Da    PI: 5.9705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0050genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
      Gh_D05G0050 14 KGPWSPEEDAKLKAYIEQYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding37.36.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Gh_D05G0050  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.73962IPR017930Myb domain
SuperFamilySSF466899.19E-2711109IPR009057Homeodomain-like
SMARTSM007173.0E-131364IPR001005SANT/Myb domain
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-251569IPR009057Homeodomain-like
CDDcd001672.79E-101662No hitNo description
PROSITE profilePS5129421.34963117IPR017930Myb domain
SMARTSM007174.6E-1167115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2370117IPR009057Homeodomain-like
CDDcd001672.80E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKQPSNIHRL SNQDPNDPHQ PTGSDDNQFS QGLSNSAMER LQLHMQLQTL QNPFSFYNNP  180
ALWPKIHPLQ EKMIQNMQAS NGNPNLLMQP LLPPNPQPAN EQSTVHQQDY PEISNTKGLE  240
GLDNCLDGIS PSDGSVPFGN GDNLMDSTST AAAVQQVSSF QGELDVFLNN KSSTTGGYPQ  300
EDQMVNQLDC FRDINGSKDS LIWWPTDFDA KSASSNSWDS TSVLQSNGMF QDFELGYPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8203890.0JF820389.1 Gossypium barbadense clone T-h7124-5 MYB5 (MYB5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690362.10.0PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL21e-103MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1U8JJ930.0A0A1U8JJ93_GOSHI; transcription factor MYB36-like
STRINGGorai.009G006700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78982639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-100myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]