PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D04G0049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 277aa MW: 30437.2 Da PI: 8.0649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 113 | 135 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Gh_D04G0049 113 YECKTCNRTFPSFQALGGHRASH 135 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 172 | 194 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Gh_D04G0049 172 HECSICGAEFTSGQALGGHMRRH 194 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.4E-13 | 112 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.14E-9 | 112 | 135 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.14E-9 | 167 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 170 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.1E-13 | 171 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.346 | 172 | 199 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 172 | 194 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 174 | 194 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDVVAMGSRH NTNVVKGKRT KRSRPQSPIP FAILCNNGGE VLDGIGNSSS SSSFEYQDST 60 TEEEEDMANC LILLAQGKSR ESPKDMLVYK KFASRKFLET PSNGTGKVGY YVYECKTCNR 120 TFPSFQALGG HRASHKKPKA TLSEVAMVEA AYEEQGPNYN NNNNSKVKVK VHECSICGAE 180 FTSGQALGGH MRRHRGSIGN QVNVLTTNTT LSLTVPMALE SEKPKKPPNV LSLSLDLNLP 240 APEDDHRESE FTFASNQQQQ QQPPLVFSAS TLVDCHY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458484.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0D2VTX8 | 0.0 | A0A0D2VTX8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.012G006900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-64 | C2H2 family protein |