PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 151aa MW: 17350.9 Da PI: 9.6861 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRrng+lKKA EL++LCdaev viifs+tgkly +ss Gh_D03G0626 9 KKIENLTSRQVTFSKRRNGLLKKARELCILCDAEVGVIIFSTTGKLYQWSS 59 68***********************************************96 PP | |||||||
2 | K-box | 40 | 1.6e-14 | 80 | 142 | 7 | 69 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++ ++a+++s + +++ Lk+e+ +L+ +l G++Le Ls+ke qqLe+qL++++ +++++K Gh_D03G0626 80 SDDQKAEQNSQSFDVSALKEEYLKLRAAYMRLNGKELEGLSFKEVQQLEHQLNEGILSVKEHK 142 34566677777889**********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.455 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.34E-41 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.3E-9 | 84 | 142 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 7.792 | 87 | 151 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MGRGKIEIKK IENLTSRQVT FSKRRNGLLK KARELCILCD AEVGVIIFST TGKLYQWSST 60 SMEDTLLRYN RGKVVEQHPS DDQKAEQNSQ SFDVSALKEE YLKLRAAYMR LNGKELEGLS 120 FKEVQQLEHQ LNEGILSVKE HKVFTNRISI S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470659.1 | 1e-100 | PREDICTED: agamous-like MADS-box protein AGL18 | ||||
Swissprot | Q39295 | 7e-45 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A0D2MLE1 | 1e-99 | A0A0D2MLE1_GOSRA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2P5SC90 | 7e-99 | A0A2P5SC90_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G090800.1 | 1e-100 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6061 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 4e-46 | AGAMOUS-like 15 |