PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0895
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 319aa    MW: 36099.7 Da    PI: 6.001
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0895genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.2e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  Gh_D02G0895  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58
                 79********************************************9887 PP
2K-box27.41.5e-10115180472
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                  +s +  ++++ e+lqqe+ k k++i  +qr +R + Ge++++Ls  e ++  q Le+ l+++R +K+ l
  Gh_D02G0895 115 ASPE-STDSQLEELQQEIVKCKSRIADIQRRLRIFEGEEITTLSQAEFHK--QILEETLQQVRLRKQGL 180
                  3333.68999*************************************995..99************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
CDDcd002653.94E-38275No hitNo description
SuperFamilySSF554559.55E-31278IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSRN  60
KSIEEILERY VNLPEHERGS LLKIDAYIHT YFQFLLKALG KLRDEADQIQ TYQAASPEST  120
DSQLEELQQE IVKCKSRIAD IQRRLRIFEG EEITTLSQAE FHKQILEETL QQVRLRKQGL  180
QEKATSSSSA LDWIRKKDPQ VHILNFLESN GLLPQRDECQ SVAENILPPL DGEEIINVGD  240
QLSPTRSGLD NSNNMQRTEL GQVNNVNLSP WTELYSTVAG NDSFPDGQPA AGGGGRALLE  300
LYVSQFTQSA ISTMNQHHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17177177MEF2 CHIMERA
6byy_B1e-17177177MEF2 CHIMERA
6byy_C1e-17177177MEF2 CHIMERA
6byy_D1e-17177177MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836423e-74JX583642.1 Gossypium hirsutum clone NBRI_GE16735 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693604.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A1U8JZ790.0A0A1U8JZ79_GOSHI; agamous-like MADS-box protein AGL104 isoform X2
STRINGGorai.005G100600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1619969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-47AGAMOUS-like 104