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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D02G0832 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
ERF |
| Protein Properties |
Length: 322aa MW: 36167.2 Da PI: 7.292 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D02G0832 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 61.8 | 1.5e-19 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f tae+Aa a+++a+ kl+g
Gh_D02G0832 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEQAALAYDKAAYKLRG 186
59******9.**********965...5*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MTATMDFNSS GAFQSDFYGG ELMEALEPFM KSASSSSPSP SPSPSYNSLS SSQTQATFYP 60
AFSGLQEPQP GSTIDLNNLD QAQSNQIQAQ FHFQTYHPSY LYQNPQPSFS SNIMVRFISP 120
KPVSMKQMGS PPKPTKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EQAALAYDKA 180
AYKLRGDSAR LNFPNLRHQG SHIGEYKPLH SSVDAKLQAI CESLEHDQKQ GNKKKTSKEM 240
KKDKVQVATP EPEEKTVKLE NSSSSSPVVS ENEVSAESSP LSDLTFSNFN EHSWPEFGFS 300
SENFMLSKYP SYEIDWDSIL KS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
XcisClique: analysis of regulatory bicliques.
BMC Bioinformatics, 2006. 7: p. 218
[PMID:16630346] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Iwase A, et al.
WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
J. Plant Res., 2015. 128(3): p. 389-97
[PMID:25810222] - Ikeuchi M, et al.
PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
Nat Plants, 2015. 1: p. 15089
[PMID:27250255] - Iwase A, et al.
WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
Plant Cell, 2017. 29(1): p. 54-69
[PMID:28011694]
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