PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 336aa MW: 38596 Da PI: 5.2311 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++ +s Gh_D02G0829 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRISHFS 58 79*******************************************99987 PP | |||||||
2 | K-box | 19.6 | 3.8e-08 | 112 | 179 | 11 | 78 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 +++ ++ qqe+ +L+++++ + ++R + + s+ eL++ e++L + l ++ ++K+ +l ++++ Gh_D02G0829 112 NSDFKEIQQEIVRLQQQLQIAEDQLRAYEPDPFRFTSMAELESCEKHLVETLANVVQRKEYILSNHLS 179 5667899********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.688 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-29 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.84E-35 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-5 | 116 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGR 60 RRIEDVFMRY INLPDREREH DIQNKEYMLR ILQQLRSEND VALQLANPAS FNSDFKEIQQ 120 EIVRLQQQLQ IAEDQLRAYE PDPFRFTSMA ELESCEKHLV ETLANVVQRK EYILSNHLSS 180 YDPSPIQQGL PPSFENEVVN WLPDNGQNQS QIFDASASLN PLRDLSSTVY DPLLQGSMSN 240 VDPHNIGDQC HVSNPNTENF APWPRSFAST GLQSNSMPPT LYSHVQQHGM VSHQEMAEMV 300 PNDQQMEIPG NYNSHGQMAD NEGSNYENRV HEHNGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-16 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616529 | 4e-61 | JX616529.1 Gossypium hirsutum clone NBRI_GE61266 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481191.1 | 0.0 | PREDICTED: MADS-box transcription factor ANR1-like | ||||
Swissprot | Q9LM46 | 1e-123 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A1U8JRY4 | 0.0 | A0A1U8JRY4_GOSHI; agamous-like MADS-box protein AGL104 | ||||
STRING | Gorai.005G093000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-116 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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