PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0693
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33276.5 Da    PI: 7.0442
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0693genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18140194256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Gh_A11G0693 140 RKKLRLSKEQSLVLEETFKEHSNLNPKHKLALAMQLNLRPRQVEVWFQNRRARTK 194
                  788899***********************************************98 PP
2HD-ZIP_I/II121.73.6e-39140229191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++d+l+een+rL+ke +eLr +l
  Gh_A11G0693 140 RKKLRLSKEQSLVLEETFKEHSNLNPKHKLALAMQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCDNLTEENRRLQKEAQELR-AL 229
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.8E-301109IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.1E-18118194IPR009057Homeodomain-like
SuperFamilySSF466892.57E-18123197IPR009057Homeodomain-like
PROSITE profilePS5007116.73136196IPR001356Homeobox domain
SMARTSM003891.4E-14138200IPR001356Homeobox domain
PfamPF000461.5E-15140194IPR001356Homeobox domain
CDDcd000861.66E-14140197No hitNo description
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PfamPF021831.3E-9196230IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-23196239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGGKEDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQR RNIWNELFQS SGIFVIDRMH  60
ADGQLETRSV AGGIDVNQAP ALAECEEEDG VSSPYSTVSS IGGKRSERDP VCDETEAERP  120
SCSRSSDDED GGGAGDDASR KKLRLSKEQS LVLEETFKEH SNLNPKHKLA LAMQLNLRPR  180
QVEVWFQNRR ARTKLKQTEL DCEYLKRCCD NLTEENRRLQ KEAQELRALK LSPQLYTHIN  240
PPTTLTMCPS CERVAVASSS SSSLAASSVP NSMHQRPVPA SPWAALPLPV THRPFNAPAS  300
RP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144SRKKLRL
2188196RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234060.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489700.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
RefseqXP_016695328.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
SwissprotP466024e-98HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0B0PSN70.0A0A0B0PSN7_GOSAR; Homeobox-leucine zipper ATHB-4-like protein
STRINGGorai.007G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.17e-94homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]