PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A09G2069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 672aa MW: 74057.4 Da PI: 6.385 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.1 | 9.8e-29 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Gh_A09G2069 214 KPRVVWSVELHQQFVAAVNQL-GIEKAVPKKILELMNVPGLTRENVASHLQKYRL 267 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.8 | 1.9e-26 | 36 | 144 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+ +y +v+ + +e al +l+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + + Ga Gh_A09G2069 36 VLVVDDDPTCLMILEKMLKACQY-NVTKCNRAETALSMLRENRngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKNVVMKGVTHGAC 130 89*********************.***************99999***********************6654.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + Gh_A09G2069 131 DYLIKPVRIEALKN 144 **********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.6E-180 | 10 | 663 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 8.6E-43 | 33 | 176 | No hit | No description |
SuperFamily | SSF52172 | 3.27E-36 | 33 | 157 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.4E-30 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.134 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.4E-24 | 36 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.19E-26 | 37 | 149 | No hit | No description |
SuperFamily | SSF46689 | 7.53E-20 | 211 | 271 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.62 | 211 | 270 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 213 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 214 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-7 | 216 | 266 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 672 aa Download sequence Send to blast |
MNSSSGKSYM STASSSVIWK AGGDVVADQF PAGLRVLVVD DDPTCLMILE KMLKACQYNV 60 TKCNRAETAL SMLRENRNGF DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDGKNV 120 VMKGVTHGAC DYLIKPVRIE ALKNIWQHVV RKRKNEWKDF EQSGSVEEGD RQPKQSEDAD 180 YSSSANEGNW KSSKRRKDDE DENDERDDTS TLKKPRVVWS VELHQQFVAA VNQLGIEKAV 240 PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGVSQHPS NLNNSFMNPQ DATFGPLDLQ 300 ALAATGQLPA QSLATLQTAG LGRSTAKSGI PMPLVDQRNI FSFENPKLRF GEAQQHVNNN 360 KQMNLLHGIP TTMEPKQLAG LHHTAQSMGN MNMPVLSHGS QSSQNNPLLM QMAQPQARGQ 420 MLNDSTVGLA PRLLSPMGQP MLSNGMATNV STRNGVPENI RAPSYNPVSQ TSSMLNFPMN 480 HTSELPGNSF PLVSTPGISS LAPKVAFQED VNSEIKGSVG FMPSYDIFND LNQHKPQNWE 540 LQNVGMMFNT SQHSNSLRGN LDHTQSVLVQ QGFSTGQNRN STVISKAMFS AGDSTGHVNA 600 QNGNQHLNSL FVDNTVRVKS ERVADAAPAN LYPDHFGQED LMSALLKQQD VIAPAENNDF 660 DFDGYSIDNI PV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-22 | 213 | 273 | 4 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.19748 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017621495.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A0B0MGP4 | 0.0 | A0A0B0MGP4_GOSAR; Two-component response regulator | ||||
STRING | Gorai.006G259700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16857.2 | 0.0 | response regulator 1 |