PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0315

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 281aa MW: 31182.7 Da PI: 7.0367

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0315	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.5e-08	26	44	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f++++G Ck+G+ CkF+H+ Gh_A09G0315 26 FYLKSGNCKFGSCCKFNHP 44 8*****************8 PP
2	zf-CCCH	25.9	1.7e-08	67	88	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG CkyG+ C++ H+ Gh_A09G0315 67 ECKYYRATGGCKYGNACRYRHS 88 8******************997 PP
3	zf-CCCH	23.5	9.7e-08	127	149	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG C+++H++ Gh_A09G0315 127 ECKYYLSPGGCKYGKACRYSHSK 149 7********************95 PP
4	zf-CCCH	37.1	5.2e-12	177	199	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r+G C yG++C+F+H+ Gh_A09G0315 177 KECPYYMRNGSCTYGSSCRFNHP 199 68********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.192	18	46	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7	23	45	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	26	44	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.54	62	90	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-4	63	89	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-6	65	92	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-6	67	88	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-7	68	92	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0021	122	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	122	150	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-6	127	149	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-6	127	153	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-5	128	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.037	173	201	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.1E-6	175	200	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	176	201	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-9	177	199	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	179	198	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGSYEEHSPV LRETPNETQP ESLSGFYLKS GNCKFGSCCK FNHPIPRTIK DKENHLGLAT 60 DQKRQIECKY YRATGGCKYG NACRYRHSNE DYVLAPLEVN SLALPFQVDI NEKSEKDGFA 120 EQTGQIECKY YLSPGGCKYG KACRYSHSKE KSRYLEKSEL PPPELNFLGL PIRMLEKECP 180 YYMRNGSCTY GSSCRFNHPD PTAAEGSSTF RSDPSGSGDH SPGNYNGGSD ALPSTEPTAP 240 SLSLNMMSNE HLKCLNQNSA YAHGVHANSE WSGHQVACLS L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608554.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBL	A0A0B0MY10	0.0	A0A0B0MY10_GOSAR; Uncharacterized protein
TrEMBL	A0A0D2RPX2	0.0	A0A0D2RPX2_GOSRA; Uncharacterized protein
STRING	Gorai.006G036900.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18083	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-38	C3H family protein