PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 359aa MW: 40586.6 Da PI: 6.851

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1334	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	287	321	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Gh_A06G1334 287 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 321 569*****************************885 PP
2	ELK	41.1	3.6e-14	241	262	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Gh_A06G1334 241 ELKGQLLRKYSGYLGSLKQEFM 262 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	6.8E-20	105	149	IPR005540	KNOX1
Pfam	PF03790	2.8E-22	107	145	IPR005540	KNOX1
SMART	SM01256	4.9E-27	154	205	IPR005541	KNOX2
Pfam	PF03791	4.0E-21	157	204	IPR005541	KNOX2
PROSITE profile	PS51213	11.174	241	261	IPR005539	ELK domain
Pfam	PF03789	5.9E-11	241	262	IPR005539	ELK domain
SMART	SM01188	2.8E-8	241	262	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	261	324	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-19	263	338	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-13	263	328	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-28	266	326	IPR009057	Homeodomain-like
CDD	cd00086	1.62E-12	273	325	No hit	No description
Pfam	PF05920	6.4E-17	281	320	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	299	322	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEGGSSSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HQQHHHHPNS GSSSLFLPQP 60 PTNNQDQNHN SSSGSSMILD DQHNTTTSNN NNTGCYFMES NDGSSSVKAK IMAHPHYHRL 120 LAAYVNCQKV GAPPEMVARL EEACASAATM GPTRTGCIGE DPALDQFMEA YCEMLTKYEQ 180 ELTKPFKEAM LFLQRVECQF KALTVSSPNP ACGEGVDRNA SSEEDVDVNN NFIDPLAEDR 240 ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA 300 ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDAAHPHY YMDNVLGNPF PMDLSPTLL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEGGSSSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HQQHHHHPNS GSSSLFLPQP  60
PTNNQDQNHN SSSGSSMILD DQHNTTTSNN NNTGCYFMES NDGSSSVKAK IMAHPHYHRL  120
LAAYVNCQKV GAPPEMVARL EEACASAATM GPTRTGCIGE DPALDQFMEA YCEMLTKYEQ  180
ELTKPFKEAM LFLQRVECQF KALTVSSPNP ACGEGVDRNA SSEEDVDVNN NFIDPLAEDR  240
ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA  300
ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDAAHPHY YMDNVLGNPF PMDLSPTLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	265	LKQEFMKKRK
2	262	266	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22049	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016753720.1	0.0	PREDICTED: homeobox protein SBH1-like
Swissprot	P46608	1e-159	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A1U8PRA9	0.0	A0A1U8PRA9_GOSHI; homeobox protein SBH1-like
STRING	Gorai.010G183800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6473	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-143	KNOX/ELK homeobox transcription factor

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]