PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1484
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 354aa    MW: 40012.9 Da    PI: 6.4129
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1484genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-09260316255
                  T--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  rkR ++ ke  + L +  +   k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gh_A05G1484 260 RKRGKLPKEARQKLLDWWAkhyKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 316
                  5555556666666655555222579*****************************885 PP
2ELK41.23.6e-14236257122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLgsLkqEF+
  Gh_A05G1484 236 ELKGQLLRKYSGYLGSLKQEFM 257
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1999143IPR005540KNOX1
PfamPF037901.7E-21101139IPR005540KNOX1
SMARTSM012561.4E-18148199IPR005541KNOX2
PfamPF037913.1E-16151198IPR005541KNOX2
SMARTSM011882.8E-8236257IPR005539ELK domain
PROSITE profilePS5121311.174236256IPR005539ELK domain
PfamPF037895.8E-11236257IPR005539ELK domain
PROSITE profilePS5007113.41256319IPR001356Homeobox domain
SuperFamilySSF466895.56E-20258329IPR009057Homeodomain-like
SMARTSM003892.2E-14258323IPR001356Homeobox domain
CDDcd000863.22E-16259320No hitNo description
Gene3DG3DSA:1.10.10.603.6E-28261321IPR009057Homeodomain-like
PfamPF059207.1E-17276315IPR008422Homeobox KN domain
PROSITE patternPS000270294317IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEGVSNSTSC MMAFGHNSNG LCPMTVMPLT AFHPHDQHQY HHHHNSDFNS LFLPLAPTNN  60
QDQNHNSSSG SSMIIDDQSN TTNNNTGCYF MESNDGSSSS VKAKIMAHPH YHRLVAAYVN  120
CQKVGAPPEV VARLEQVCAS AATMGPSTTG CIGEDPALDE FMEAYSEMLA KYEQELSKTF  180
KDAMLFLQSV EYQFKELTVS PSNSACGDAV NLNGSSEEEA DMSNHHFIDP LAEDRELKGQ  240
LLRKYSGYLG SLKQEFMKKR KRGKLPKEAR QKLLDWWAKH YKWPYPSESQ KLALAESTGL  300
DQKQINNWFI NQRKRHWKPS EDMQFVVMEA TYPHYFMDNI LGNPFPMDLS HALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251260LKQEFMKKRK
2257264KKRKRGKL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749503.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-147HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1U8PGR10.0A0A1U8PGR1_GOSHI; homeobox protein SBH1-like
STRINGGorai.009G181500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-132KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]