PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1097
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26836.2 Da    PI: 4.7714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1097genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-212770245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + en+s rqvtfskRr+g++KKA EL++LC+ ++ +i+fs++gk
  Gh_A04G1097 27 KLENESSRQVTFSKRRTGLFKKAIELCILCNCNIGIIVFSPKGK 70
                 679****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-311877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3291878IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-271992IPR002100Transcription factor, MADS-box
CDDcd002652.22E-371995No hitNo description
PRINTSPR004043.1E-202040IPR002100Transcription factor, MADS-box
PfamPF003193.1E-232874IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-204055IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-205576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASLNQTRSS NTTTKATRGR QKIPIKKLEN ESSRQVTFSK RRTGLFKKAI ELCILCNCNI  60
GIIVFSPKGK PFCFGHPDID TILERYLSKN PNHDDGLMMS GDDIAPCLEE FNEEIRETLE  120
KLEEEKKRSK EIQKENEERK MKGLFWWDDP IDNNMGIEEL EAYAKALEEL RNNVANRASA  180
LMEDVFAMST AMTVANPDGM GNSFAVQNSG FAVGDIGGYG DFNLGVEGFN FGNGHDLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-1819108288MEF2C
5f28_B6e-1819108288MEF2C
5f28_C6e-1819108288MEF2C
5f28_D6e-1819108288MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733740.11e-179PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U8N4181e-177A0A1U8N418_GOSHI; agamous-like MADS-box protein AGL61
STRINGGorai.N026300.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23AGAMOUS-like 61