PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1700
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 128aa    MW: 14924.4 Da    PI: 10.5208
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1700genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.3e-1616109194
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+lt  dv    r+++p   ++eh    +g+  +s + +++d+ +++W+++l  rk++g+   vltkGW +Fvk  gLk+gD v+F ++g+++ + 
  Gh_A03G1700  16 FSKILTATDVRV--RFSFPTATMREHfkllEGS--QSLDFQVRDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLKVGDKVIFVVHGNHNDH- 108
                  667777777765..47***********977555..7889***************6688888899*************************98886663. PP

                  EE CS
           B3  93 vv 94 
                   +
  Gh_A03G1700 109 -L 109
                  .3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2212115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-1915116IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-171599No hitNo description
SMARTSM010192.1E-916115IPR003340B3 DNA binding domain
PfamPF023622.8E-1316107IPR003340B3 DNA binding domain
PROSITE profilePS508639.96853115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MHMQSSESEP VMKELFSKIL TATDVRVRFS FPTATMREHF KLLEGSQSLD FQVRDKYSKV  60
WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LKVGDKVIFV VHGNHNDHLG ILVKRNIKLL  120
GSEHWADL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098840401e-115
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.13e-86PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2P5Y9602e-89A0A2P5Y960_GOSBA; Uncharacterized protein
STRINGGorai.005G241200.14e-85(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.12e-09ARF family protein