PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1564
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 532aa    MW: 60477.8 Da    PI: 6.6586
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1564genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.41.3e-931725312374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  +e L+++A+++++++l+laq +Larl ++ +sp+g+p+qR+a+yf+eAL + l++   +l    +++ +s+++ +++++a+k+fs + Pi+ fsh+t+
  Gh_A02G1564 172 IEELVRAADCFDTQELQLAQVILARLGQRlRSPSGKPLQRAAFYFKEALLSLLTG---GLT--RTTRLSSWNDIVQTIKAYKAFSGINPIPMFSHFTT 264
                  678*************************99*************************...444..4667777789************************* PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  Nqa++eav       +HiiDfdi+ G+Q+++L++++ +R  ++   +R+T+v+++e   + e++ ++++L +fA+el+++f++++++ +++e+l++++
  Gh_A02G1564 265 NQALMEAVLDGssPLIHIIDFDIGFGGQYASLMREMFERHdHSRKFIRVTAVVPEE--YAIETRLIKDNLVQFASELKLRFQIEFVLLRTFEMLSFKA 360
                  *******854436889************************556669********66..99999*********************************** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  +++  gE++a+ l+  ++r l   +++    +++L+ +++++P++vv+v++e  ++ +++sF + f++ le+y+++f+sl+a +  + e+ +k+E  l
  Gh_A02G1564 361 FKFIDGEKTAILLSPLIFRSL--GLNV----TAFLNDLRRVNPTIVVFVDNEvwMESGTTSFRKNFVNGLEFYAMMFESLDAAVVGNGEWVRKIETLL 452
                  ***************999999..3333....57*******************76677999************************9999********** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l+++i  +v ++ ++      t+  Wrer++ aG+++v+ls+ a+ qa++ll kv+++g++v +++++lvl+W + +Lv++SaWr
  Gh_A02G1564 453 LRPRILAAVETAARS------TAPPWRERFRGAGMRAVHLSQLAEFQAECLLGKVQVRGFHVAKRQAELVLCWYESALVATSAWR 531
                  *********999887......99*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.064145511IPR005202Transcription factor GRAS
PfamPF035144.6E-91172531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MRVPVSSPQS NHCQSPKPNN NSNTSSTRNI SFHGATINSV PTSIYEPTSV LELRRSPSPG  60
HDNPVDHHQH QQQQQQHQAP LEWDEHVLRN MDWDSIMKDL GLDDESVPSI KTIPPQENHI  120
QNLPEFTSCE LTHPTEFNNL YDFYPSHNID ISNTTTYGFN NMGNFNSGFD FIEELVRAAD  180
CFDTQELQLA QVILARLGQR LRSPSGKPLQ RAAFYFKEAL LSLLTGGLTR TTRLSSWNDI  240
VQTIKAYKAF SGINPIPMFS HFTTNQALME AVLDGSSPLI HIIDFDIGFG GQYASLMREM  300
FERHDHSRKF IRVTAVVPEE YAIETRLIKD NLVQFASELK LRFQIEFVLL RTFEMLSFKA  360
FKFIDGEKTA ILLSPLIFRS LGLNVTAFLN DLRRVNPTIV VFVDNEVWME SGTTSFRKNF  420
VNGLEFYAMM FESLDAAVVG NGEWVRKIET LLLRPRILAA VETAARSTAP PWRERFRGAG  480
MRAVHLSQLA EFQAECLLGK VQVRGFHVAK RQAELVLCWY ESALVATSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2417753025378Protein SCARECROW
5b3h_A1e-2417753024377Protein SCARECROW
5b3h_D1e-2417753024377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642789.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D2NUZ60.0A0A0D2NUZ6_GOSRA; Uncharacterized protein
STRINGGorai.003G016500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-157GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]