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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036449001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 274aa MW: 31293.5 Da PI: 10.0656 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.6 | 1.8e-41 | 69 | 192 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93 a+kkdrhski T++g+R RRvRls+++a++fFdLqd+LGfdk+s t+eWLl ++k+aike ++ + s ++e+ +s ssas + + s GSVIVT01036449001 69 AVKKDRHSKITTAKGPRERRVRLSIKIARKFFDLQDMLGFDKASRTLEWLLMKSKTAIKEVVRMKHSCNEEA---KSLSSAS----ECEVVS 153 89**************************************************************55555333...2222222....234555 PP TCP 94 aakskksqksaasalnlakesrakarararertrekmri 132 +++ ++ ++++ l kesrakarararertrekm+ GSVIVT01036449001 154 EMNDAAESGDPQEILFRRKESRAKARARARERTREKMSS 192 6677777777887888999******************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-37 | 70 | 159 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.847 | 71 | 129 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.483 | 172 | 189 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MHPVPTSIPS PPQMFSSSNS GNPFQHLPSL FHQSPPFVGH ESDDIFLHHH NDLLVDYYGP 60 SNFLPGKRAV KKDRHSKITT AKGPRERRVR LSIKIARKFF DLQDMLGFDK ASRTLEWLLM 120 KSKTAIKEVV RMKHSCNEEA KSLSSASECE VVSEMNDAAE SGDPQEILFR RKESRAKARA 180 RARERTREKM SSLEESSSRP LANHTQREDI IEESIVIKRK LKPNSYFPHP PQNWDINTPS 240 ARSSFCAMTN MNLSTEFQVF GKPWEAYNNL SLR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.29214 | 0.0 | bud |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464158 | 0.0 | AM464158.1 Vitis vinifera contig VV78X120795.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660504.1 | 1e-104 | PREDICTED: transcription factor CYCLOIDEA | ||||
TrEMBL | A0A438EB13 | 1e-103 | A0A438EB13_VITVI; Transcription factor CYCLOIDEA | ||||
TrEMBL | A0A438JC24 | 1e-103 | A0A438JC24_VITVI; Transcription factor CYCLOIDEA | ||||
STRING | VIT_14s0083g00150.t01 | 2e-76 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036449001 |