PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033795001 | ||||||||
Common Name | LOC100266546, VIT_08s0007g03790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 20007.5 Da PI: 8.8724 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.8 | 7.1e-15 | 59 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+Wv+e+r p++ r r++lg+f +++Aa+a++ a+++++g GSVIVT01033795001 59 LYKGVRQR--NGKWVCELRQPRK---RNRIWLGTFPCPDMAARAYDVAALAIKG 107 69***975..6*********865...58*********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.37E-26 | 58 | 117 | No hit | No description |
Pfam | PF00847 | 5.7E-11 | 58 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 59 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-28 | 59 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-17 | 59 | 117 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.361 | 59 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-7 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-7 | 97 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNPFERQVTS SFSVESSSSS SFSSSTRAPG SSSQTHEAGS SSQKRKAGRK KFKETRHPLY 60 KGVRQRNGKW VCELRQPRKR NRIWLGTFPC PDMAARAYDV AALAIKGDSA SLNFPESVSQ 120 LPHEDSDPCQ LFVDEEALFN MPTLLDSMAE GLILTPLALK KGFNWNSIKE AEDFTLWTD* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488717 | 0.0 | AM488717.2 Vitis vinifera contig VV78X053710.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654049.1 | 1e-108 | PREDICTED: dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 7e-41 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 7e-41 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A438JSS1 | 1e-106 | A0A438JSS1_VITVI; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | F6HKI3 | 1e-106 | F6HKI3_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g03790.t01 | 1e-107 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 7e-41 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033795001 |
Entrez Gene | 100266546 |
Publications ? help Back to Top | |||
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