PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033795001
Common NameLOC100266546, VIT_08s0007g03790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 180aa    MW: 20007.5 Da    PI: 8.8724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033795001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.1e-1559107255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ykGVr++  +g+Wv+e+r p++   r r++lg+f  +++Aa+a++ a+++++g
  GSVIVT01033795001  59 LYKGVRQR--NGKWVCELRQPRK---RNRIWLGTFPCPDMAARAYDVAALAIKG 107
                        69***975..6*********865...58*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-2658117No hitNo description
PfamPF008475.7E-1158107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2659117IPR001471AP2/ERF domain
SMARTSM003803.3E-2859121IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1759117IPR016177DNA-binding domain
PROSITE profilePS5103219.36159115IPR001471AP2/ERF domain
PRINTSPR003674.6E-76071IPR001471AP2/ERF domain
PRINTSPR003674.6E-797117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNPFERQVTS SFSVESSSSS SFSSSTRAPG SSSQTHEAGS SSQKRKAGRK KFKETRHPLY  60
KGVRQRNGKW VCELRQPRKR NRIWLGTFPC PDMAARAYDV AALAIKGDSA SLNFPESVSQ  120
LPHEDSDPCQ LFVDEEALFN MPTLLDSMAE GLILTPLALK KGFNWNSIKE AEDFTLWTD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4887170.0AM488717.2 Vitis vinifera contig VV78X053710.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654049.11e-108PREDICTED: dehydration-responsive element-binding protein 1F
SwissprotA2WZI47e-41DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z57e-41DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A438JSS11e-106A0A438JSS1_VITVI; Dehydration-responsive element-binding protein 1F
TrEMBLF6HKI31e-106F6HKI3_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03790.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.17e-41C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]