PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01032076001 | ||||||||
Common Name | LOC100244743, VIT_13s0064g01060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 322aa MW: 35968.7 Da PI: 8.4916 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 157 | 176 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C k+F+r nL+ H+ GSVIVT01032076001 157 FSCAVCCKTFNRYNNLQMHM 176 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 243 | 263 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+k+F k + ++H +++ GSVIVT01032076001 243 CRKCNKPFAVKGDWRTHEKNC 263 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.076 | 157 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 157 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MTDPHCNFFK GWFNFMPLQP HFPPSISPYP AHACNNLYSQ SQTPPPSPPL KEALPLLSLS 60 PISRRQDEPQ TRDKAQSLFS TSASDGDDKR TVTVALHIGL PSPSSDLVGS SLPSSTEMSI 120 DQDQGILGAS GCPFNRVNNG QYWIPTPSQI LIGPTQFSCA VCCKTFNRYN NLQMHMWGHG 180 SQYRKGPESL RGTQPTAMLK LPCYCCSPGC KHNIDHPRSR PLKDFRTLQT HYKRKHGIKH 240 FLCRKCNKPF AVKGDWRTHE KNCGKVWYCI CGSDFKHKRS LKDHIKAFGR GHAAIGTDFF 300 DQEEDDPASE IEHDGEPSPS V* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM443321 | 0.0 | AM443321.2 Vitis vinifera contig VV78X177522.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275710.2 | 0.0 | PREDICTED: zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-124 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A438J1Q4 | 0.0 | A0A438J1Q4_VITVI; Zinc finger protein WIP2 | ||||
TrEMBL | F6HBF1 | 0.0 | F6HBF1_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0064g01060.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-117 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01032076001 |
Entrez Gene | 100244743 |
Publications ? help Back to Top | |||
---|---|---|---|
|