PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032076001
Common NameLOC100244743, VIT_13s0064g01060
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 322aa    MW: 35968.7 Da    PI: 8.4916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032076001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012157176120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C  C k+F+r  nL+ H+
  GSVIVT01032076001 157 FSCAVCCKTFNRYNNLQMHM 176
                        89*****************9 PP
2zf-C2H212.40.00048243263323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C +C+k+F  k + ++H +++
  GSVIVT01032076001 243 CRKCNKPFAVKGDWRTHEKNC 263
                        *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.076157184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4157176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTDPHCNFFK GWFNFMPLQP HFPPSISPYP AHACNNLYSQ SQTPPPSPPL KEALPLLSLS  60
PISRRQDEPQ TRDKAQSLFS TSASDGDDKR TVTVALHIGL PSPSSDLVGS SLPSSTEMSI  120
DQDQGILGAS GCPFNRVNNG QYWIPTPSQI LIGPTQFSCA VCCKTFNRYN NLQMHMWGHG  180
SQYRKGPESL RGTQPTAMLK LPCYCCSPGC KHNIDHPRSR PLKDFRTLQT HYKRKHGIKH  240
FLCRKCNKPF AVKGDWRTHE KNCGKVWYCI CGSDFKHKRS LKDHIKAFGR GHAAIGTDFF  300
DQEEDDPASE IEHDGEPSPS V*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4433210.0AM443321.2 Vitis vinifera contig VV78X177522.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275710.20.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-124ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A438J1Q40.0A0A438J1Q4_VITVI; Zinc finger protein WIP2
TrEMBLF6HBF10.0F6HBF1_VITVI; Uncharacterized protein
STRINGVIT_13s0064g01060.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]