PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031853001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 1086aa    MW: 124404 Da    PI: 7.3127
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031853001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.4e-14581301187
                        HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        ++ +rl +p  f++++ g ++e   + +l+d+ gr+W v++   + ++ +++ kGW++F  +n ++egD +vF++dg+
  GSVIVT01031853001  58 FSWDRLQIPTAFVKHFnGFVPE---KAILRDSVGRVWHVEV--GQIGKNVYFLKGWQQFLTDNLVEEGDLFVFQYDGS 130
                        56689********777766654...59**************..77777788888*********************986 PP
2B332.81.2e-102653361287
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        +++ l++p + +++h++    +  + l d++grsW   ++++k + r++++ GW+ F+k n++ e+D+++ +++++
  GSVIVT01031853001 265 RRSKLYVPVDILKDHNIA--LPPRVLLCDPHGRSWPGDVTIWKDG-RTWIG-GWRAFCKWNHVGENDSCICEFVQE 336
                        6677999*****999544..5557*************99999997.55777.******************998865 PP
3B340.35.6e-133514201790
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ++p  f+e+++g    + + +l+d  gr+W v++     ++ +++ +GW++F  +n ++egDf+vF++ g+  f
  GSVIVT01031853001 351 RIPTAFVEHFNGFM--PEKAILRDFVGRVWHVEV--GPIGKNVYFLNGWQQFLTENSVEEGDFLVFRYAGNCIF 420
                        79*****8885553..3479**************..99888888888*********************998776 PP
4B333.11e-105756233585
                        EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         + l+d++grsW   ++++k + r++++ GW+ F+k+n+L+e+D ++ +++
  GSVIVT01031853001 575 RVLLRDLHGRSWPGDVSVWKDG-RTWIG-GWQAFCKSNHLDENDCCIYEFV 623
                        589*************999997.55777.******************9955 PP
5B351.51.8e-16667755298
                        EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        fkv       +s+ l +p  f e++ g +++   + +l+d+ gr+W+v+l  +k ++ ++++kGW++Fv +n ++  Df+vF++dg   f  
  GSVIVT01031853001 667 FKVC--LPECSSDKLLIPTAFREHFnGFVPH---KAILRDPVGRVWQVEL--SKIGKDVYFQKGWQKFVTDNFVEMEDFLVFRYDGGYIF-- 749
                        5555..45567788*******8666766644...69**************..99999***************************986666.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         +k+fr
  GSVIVT01031853001 750 DFKLFR 755
                        666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.94348141IPR003340B3 DNA binding domain
SMARTSM010195.4E-548141IPR003340B3 DNA binding domain
PfamPF023625.2E-1257130IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-1858143IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1759142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-1261130No hitNo description
Gene3DG3DSA:2.40.330.104.7E-18250349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-20251350IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.122254351IPR003340B3 DNA binding domain
CDDcd100171.03E-9255350No hitNo description
SMARTSM010192.6E-8257342IPR003340B3 DNA binding domain
PfamPF023621.2E-8264338IPR003340B3 DNA binding domain
SMARTSM010195.9E-4343428IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-18348430IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-11350420IPR003340B3 DNA binding domain
CDDcd100175.14E-12351414No hitNo description
Gene3DG3DSA:2.40.330.102.6E-16351428IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393352428IPR003340B3 DNA binding domain
PROSITE profilePS508639.361543641IPR003340B3 DNA binding domain
SMARTSM010190.0089545641IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-13553626IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-14556628IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-8572626IPR003340B3 DNA binding domain
CDDcd100177.04E-8576639No hitNo description
Gene3DG3DSA:2.40.330.101.4E-22658759IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-24660759IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.971664757IPR003340B3 DNA binding domain
CDDcd100171.50E-17664755No hitNo description
SMARTSM010197.5E-12666757IPR003340B3 DNA binding domain
PfamPF023622.0E-14667754IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-18821921IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-15821921IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.572825922IPR003340B3 DNA binding domain
CDDcd100171.52E-9826920No hitNo description
SMARTSM010193.9E-10828922IPR003340B3 DNA binding domain
PfamPF023621.3E-7837909IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MKISYTAENG FLIFGLGEID LVRIRNMKNR TRLKNQIMVS KQPCNMGLQH QKSGGHEFSW  60
DRLQIPTAFV KHFNGFVPEK AILRDSVGRV WHVEVGQIGK NVYFLKGWQQ FLTDNLVEEG  120
DLFVFQYDGS YIFDFKLYGT TGCQKKDSEV NVDVNKKKFF VKGEEDVEEV ERNEEEEEEE  180
EEEEEPQSKS SNKGVVVFKR KYSGRGGYKQ TAIKKTRSAY KETSHTKSKY KKACTGNVEV  240
DNALDFKSIV KPENPCFITK IRPGRRSKLY VPVDILKDHN IALPPRVLLC DPHGRSWPGD  300
VTIWKDGRTW IGGWRAFCKW NHVGENDSCI CEFVQESGCR GDLIVVHIHR RIPTAFVEHF  360
NGFMPEKAIL RDFVGRVWHV EVGPIGKNVY FLNGWQQFLT ENSVEEGDFL VFRYAGNCIF  420
DFKLLGRTEC EKKDTKVVDM DIYKKDFCVK EKDVEEAEGE EEEEEEEEKE EEEEEEEEDE  480
EEEKMEEDDE EEERKLQPKS PNMKMVVKHK YSSRGCPAID RKNYCGYKQS AVKKTRGVYK  540
ETAHTKSNYK KASSSQAEYV PADILQDFNI ALPPRVLLRD LHGRSWPGDV SVWKDGRTWI  600
GGWQAFCKSN HLDENDCCIY EFVLENGHHG DFIVLHIHRA QPKISPRGFF LLQNEMSSPQ  660
EECPEFFKVC LPECSSDKLL IPTAFREHFN GFVPHKAILR DPVGRVWQVE LSKIGKDVYF  720
QKGWQKFVTD NFVEMEDFLV FRYDGGYIFD FKLFRNTGCE KKGSEEINVG IYKRCFFGYK  780
QTAIKKSRVA SEESNCTKRK YKEASAVQVE ENIAFEIESI VNPQNPYFET KVRPARRSKL  840
YVPLDVLRDH NIKLPPKMTL RDPLGRLWIG KVAVWKDGRT WIGWKPFCKW NNVGENDTCI  900
CEFVQESGHE GYLLVVHILR AQPSRRAPKC KCRAESGEEM AEPMGQSFSR NKLISSACQP  960
TILLSPYPTS PISLLTKCHL LPSHHLCTSI FEQSSSTSSH QIVGKIAMAT ASATLSPSTF  1020
SAAAIAGLGR TSQRRKTNVH FIGGLNSFDG LKAYNSVASL GLPVCTEQSF AKIVGSLKYS  1080
GLRQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305900.0AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074538.11e-178PREDICTED: putative B3 domain-containing protein At5g66980 isoform X5
TrEMBLF6HQF80.0F6HQF8_VITVI; Uncharacterized protein
STRINGVIT_03s0063g01460.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-24B3 family protein