PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031853001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | B3 | ||||||||
Protein Properties | Length: 1086aa MW: 124404 Da PI: 7.3127 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.4e-14 | 58 | 130 | 11 | 87 |
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++ +rl +p f++++ g ++e + +l+d+ gr+W v++ + ++ +++ kGW++F +n ++egD +vF++dg+ GSVIVT01031853001 58 FSWDRLQIPTAFVKHFnGFVPE---KAILRDSVGRVWHVEV--GQIGKNVYFLKGWQQFLTDNLVEEGDLFVFQYDGS 130 56689********777766654...59**************..77777788888*********************986 PP | |||||||
2 | B3 | 32.8 | 1.2e-10 | 265 | 336 | 12 | 87 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ l++p + +++h++ + + l d++grsW ++++k + r++++ GW+ F+k n++ e+D+++ +++++ GSVIVT01031853001 265 RRSKLYVPVDILKDHNIA--LPPRVLLCDPHGRSWPGDVTIWKDG-RTWIG-GWRAFCKWNHVGENDSCICEFVQE 336 6677999*****999544..5557*************99999997.55777.******************998865 PP | |||||||
3 | B3 | 40.3 | 5.6e-13 | 351 | 420 | 17 | 90 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++p f+e+++g + + +l+d gr+W v++ ++ +++ +GW++F +n ++egDf+vF++ g+ f GSVIVT01031853001 351 RIPTAFVEHFNGFM--PEKAILRDFVGRVWHVEV--GPIGKNVYFLNGWQQFLTENSVEEGDFLVFRYAGNCIF 420 79*****8885553..3479**************..99888888888*********************998776 PP | |||||||
4 | B3 | 33.1 | 1e-10 | 575 | 623 | 35 | 85 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 + l+d++grsW ++++k + r++++ GW+ F+k+n+L+e+D ++ +++ GSVIVT01031853001 575 RVLLRDLHGRSWPGDVSVWKDG-RTWIG-GWQAFCKSNHLDENDCCIYEFV 623 589*************999997.55777.******************9955 PP | |||||||
5 | B3 | 51.5 | 1.8e-16 | 667 | 755 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fkv +s+ l +p f e++ g +++ + +l+d+ gr+W+v+l +k ++ ++++kGW++Fv +n ++ Df+vF++dg f GSVIVT01031853001 667 FKVC--LPECSSDKLLIPTAFREHFnGFVPH---KAILRDPVGRVWQVEL--SKIGKDVYFQKGWQKFVTDNFVEMEDFLVFRYDGGYIF-- 749 5555..45567788*******8666766644...69**************..99999***************************986666.. PP EEEEE- CS B3 93 vvkvfr 98 +k+fr GSVIVT01031853001 750 DFKLFR 755 666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.943 | 48 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-5 | 48 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-12 | 57 | 130 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.16E-18 | 58 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-17 | 59 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.38E-12 | 61 | 130 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-18 | 250 | 349 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-20 | 251 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.122 | 254 | 351 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.03E-9 | 255 | 350 | No hit | No description |
SMART | SM01019 | 2.6E-8 | 257 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-8 | 264 | 338 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-4 | 343 | 428 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-18 | 348 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.6E-11 | 350 | 420 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.14E-12 | 351 | 414 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-16 | 351 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.393 | 352 | 428 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.361 | 543 | 641 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0089 | 545 | 641 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-13 | 553 | 626 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-14 | 556 | 628 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-8 | 572 | 626 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.04E-8 | 576 | 639 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-22 | 658 | 759 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-24 | 660 | 759 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.971 | 664 | 757 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.50E-17 | 664 | 755 | No hit | No description |
SMART | SM01019 | 7.5E-12 | 666 | 757 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-14 | 667 | 754 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-18 | 821 | 921 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-15 | 821 | 921 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.572 | 825 | 922 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.52E-9 | 826 | 920 | No hit | No description |
SMART | SM01019 | 3.9E-10 | 828 | 922 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-7 | 837 | 909 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1086 aa Download sequence Send to blast |
MKISYTAENG FLIFGLGEID LVRIRNMKNR TRLKNQIMVS KQPCNMGLQH QKSGGHEFSW 60 DRLQIPTAFV KHFNGFVPEK AILRDSVGRV WHVEVGQIGK NVYFLKGWQQ FLTDNLVEEG 120 DLFVFQYDGS YIFDFKLYGT TGCQKKDSEV NVDVNKKKFF VKGEEDVEEV ERNEEEEEEE 180 EEEEEPQSKS SNKGVVVFKR KYSGRGGYKQ TAIKKTRSAY KETSHTKSKY KKACTGNVEV 240 DNALDFKSIV KPENPCFITK IRPGRRSKLY VPVDILKDHN IALPPRVLLC DPHGRSWPGD 300 VTIWKDGRTW IGGWRAFCKW NHVGENDSCI CEFVQESGCR GDLIVVHIHR RIPTAFVEHF 360 NGFMPEKAIL RDFVGRVWHV EVGPIGKNVY FLNGWQQFLT ENSVEEGDFL VFRYAGNCIF 420 DFKLLGRTEC EKKDTKVVDM DIYKKDFCVK EKDVEEAEGE EEEEEEEEKE EEEEEEEEDE 480 EEEKMEEDDE EEERKLQPKS PNMKMVVKHK YSSRGCPAID RKNYCGYKQS AVKKTRGVYK 540 ETAHTKSNYK KASSSQAEYV PADILQDFNI ALPPRVLLRD LHGRSWPGDV SVWKDGRTWI 600 GGWQAFCKSN HLDENDCCIY EFVLENGHHG DFIVLHIHRA QPKISPRGFF LLQNEMSSPQ 660 EECPEFFKVC LPECSSDKLL IPTAFREHFN GFVPHKAILR DPVGRVWQVE LSKIGKDVYF 720 QKGWQKFVTD NFVEMEDFLV FRYDGGYIFD FKLFRNTGCE KKGSEEINVG IYKRCFFGYK 780 QTAIKKSRVA SEESNCTKRK YKEASAVQVE ENIAFEIESI VNPQNPYFET KVRPARRSKL 840 YVPLDVLRDH NIKLPPKMTL RDPLGRLWIG KVAVWKDGRT WIGWKPFCKW NNVGENDTCI 900 CEFVQESGHE GYLLVVHILR AQPSRRAPKC KCRAESGEEM AEPMGQSFSR NKLISSACQP 960 TILLSPYPTS PISLLTKCHL LPSHHLCTSI FEQSSSTSSH QIVGKIAMAT ASATLSPSTF 1020 SAAAIAGLGR TSQRRKTNVH FIGGLNSFDG LKAYNSVASL GLPVCTEQSF AKIVGSLKYS 1080 GLRQS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430590 | 0.0 | AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019074538.1 | 1e-178 | PREDICTED: putative B3 domain-containing protein At5g66980 isoform X5 | ||||
TrEMBL | F6HQF8 | 0.0 | F6HQF8_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g01460.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8585 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031853001 |