PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031461001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 229aa    MW: 24751.7 Da    PI: 7.2025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031461001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004883105123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+++F++   L  H  +H
  GSVIVT01031461001  83 YECKTCNRTFPSFQALGGHRASH 105
                        99**********99999998887 PP
2zf-C2H214.20.00013134156123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  Fs+   L  H+r+H
  GSVIVT01031461001 134 HECSICGSEFSSGQALGGHMRRH 156
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-1382107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-882156No hitNo description
PROSITE profilePS5015710.63783110IPR007087Zinc finger, C2H2
SMARTSM003550.05283105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-4132156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-12133158IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325134161IPR007087Zinc finger, C2H2
SMARTSM003550.02134156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MITVHGFRGG GGGDYSSISS PTSSGEVLES TEEEEDMANC LILLAQGLGP RQIEEGGAVE  60
KLSSPSFTEM ATTTAGKAGF YVYECKTCNR TFPSFQALGG HRASHKKPKA ISPPLSLQIG  120
NNKALHSSNK SKVHECSICG SEFSSGQALG GHMRRHRSNT STRITMSMDA GKMDSHDHHK  180
KEPRNVLPLD LNLPAPEDEL HHRDSKFQFT SNQQHLVFSA PALVDCHY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4437720.0AM443772.2 Vitis vinifera contig VV78X204692.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274374.11e-137PREDICTED: zinc finger protein ZAT5
SwissprotQ681X41e-51ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLF6GW811e-136F6GW81_VITVI; Uncharacterized protein
STRINGVIT_06s0061g00760.t011e-137(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-52C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]