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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031461001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 24751.7 Da PI: 7.2025 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSVIVT01031461001 83 YECKTCNRTFPSFQALGGHRASH 105 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H GSVIVT01031461001 134 HECSICGSEFSSGQALGGHMRRH 156 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.8E-13 | 82 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.2E-8 | 82 | 156 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.7E-4 | 132 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.0E-12 | 133 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MITVHGFRGG GGGDYSSISS PTSSGEVLES TEEEEDMANC LILLAQGLGP RQIEEGGAVE 60 KLSSPSFTEM ATTTAGKAGF YVYECKTCNR TFPSFQALGG HRASHKKPKA ISPPLSLQIG 120 NNKALHSSNK SKVHECSICG SEFSSGQALG GHMRRHRSNT STRITMSMDA GKMDSHDHHK 180 KEPRNVLPLD LNLPAPEDEL HHRDSKFQFT SNQQHLVFSA PALVDCHY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM443772 | 0.0 | AM443772.2 Vitis vinifera contig VV78X204692.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274374.1 | 1e-137 | PREDICTED: zinc finger protein ZAT5 | ||||
Swissprot | Q681X4 | 1e-51 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | F6GW81 | 1e-136 | F6GW81_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0061g00760.t01 | 1e-137 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 5e-52 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031461001 |
Publications ? help Back to Top | |||
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