PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028315001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 337aa    MW: 37677.2 Da    PI: 6.5166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028315001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-17138187355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  GSVIVT01028315001 138 YRGVRKRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSMRG 187
                        9*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-22137197IPR016177DNA-binding domain
SMARTSM003806.1E-36137201IPR001471AP2/ERF domain
PROSITE profilePS5103222.879137195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-29137196IPR001471AP2/ERF domain
PfamPF008471.2E-12138187IPR001471AP2/ERF domain
PRINTSPR003676.6E-10138149IPR001471AP2/ERF domain
CDDcd000184.89E-18138196No hitNo description
PRINTSPR003676.6E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MARDEVIKTT SGVQLDSDPP PCPIDSRALI PSGKNIAFNS MDSSSFYHQY QSSEFSPESS  60
SFGSSEYFSS WDEPLFHHNS LPFNINDSDE MILFDMLAEG ARDSSETASS VGGAAKEEEV  120
TSNAKEPTPN KKEKEKTYRG VRKRPWGKFA AEIRDSTRHG VRVWLGTFDS AEAAALAYDQ  180
AAFSMRGTMA VLNFPVERVV ESLRDIKYAC EDGGSPVVAL KRRHSMRRKS TEARKEDITG  240
RDGTVHASSA ERGSKSVVTV GRRLSVEDDE RRVADRFFKI MEYPHKSMVT ALILVNGHHY  300
LLVDLRSSTF HCHFHLGFVW VKSIEADLEF YGWVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-271381971574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4439150.0AM443915.2 Vitis vinifera contig VV78X062884.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264656.11e-138PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y91e-60ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLF6HZJ31e-137F6HZJ3_VITVI; Uncharacterized protein
STRINGVIT_07s0005g03260.t011e-137(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-45ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]