PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027040001
Common NameLOC100248302, VIT_15s0046g01440
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 431aa    MW: 45769.8 Da    PI: 6.5279
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027040001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.87.5e-21285347163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+e+krerrkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN+ Lk+e+++l+++++klk e+
  GSVIVT01027040001 285 EREIKRERRKQSNRESARRSRLRKQAETEELALKVESLNTENSVLKSEINRLRENSEKLKLEN 347
                        89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.5E-39132266No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-16279344No hitNo description
SMARTSM003384.2E-19285349IPR004827Basic-leucine zipper domain
PfamPF001705.9E-19285347IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.208287350IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10288344No hitNo description
CDDcd147022.08E-20290338No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGNEEEGKSP KPEKPTSPPP PDQANIHVYP DWAAMQAYYG PRVTLPPYYN SAMASGHAPH  60
PYIWGPPQPM MPPYGPPYAA IYSPGGVYPH PAVPLGSHSH GHGVQSSPVV SEALAAPPLS  120
IETPAKSSGN TDRGLMKKLK GFDGLAMSIG NGNGESTEGG SDHGLSQSGE TEGSSDGSDG  180
NTAGADQTRR KRSREGTPPI GGDGKTETQA TSAPSAEVNA GSDKVLGVAV PPTSVTGKLA  240
GAVLSPRMST ALELRNPPSV NAKTSPSSIP QPGAMVPSDT WILNEREIKR ERRKQSNRES  300
ARRSRLRKQA ETEELALKVE SLNTENSVLK SEINRLRENS EKLKLENATL MEKLKSAQLE  360
QAEDTHLNKV DDKRVLPVST ENLLSRVNNS GSVDRSTEEE GDMYEKNTNT GAKLHQLLDT  420
SPRADAVAAG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301307RRSRLRK
2301308RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.103930.0bud| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4609651e-135AM460965.1 Vitis vinifera contig VV78X255145.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279966.20.0PREDICTED: common plant regulatory factor 1 isoform X1
SwissprotQ990891e-159CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A438JM420.0A0A438JM42_VITVI; Common plant regulatory factor 1
TrEMBLD7UCK30.0D7UCK3_VITVI; Uncharacterized protein
STRINGVIT_15s0046g01440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-92G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]