PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01026636001 | ||||||||
Common Name | VIT_04s0044g00160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | WOX | ||||||||
Protein Properties | Length: 237aa MW: 26755.8 Da PI: 6.5114 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.9e-20 | 60 | 120 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e+++ l +++e++V++WFqNrRa+ k+ GSVIVT01026636001 60 RQRWTPTPVQLQILERIFDQgYGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRAQSKR 120 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 98.4 | 5.6e-32 | 59 | 122 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+a +++kq GSVIVT01026636001 59 ARQRWTPTPVQLQILERIFDQGYGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRAQSKRKQ 122 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 55 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.009 | 56 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-12 | 58 | 125 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 59 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.03E-12 | 60 | 122 | No hit | No description |
Pfam | PF00046 | 6.7E-18 | 60 | 120 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTDAQVEILR KQISVYATIC EQLVEMHKSL TSHQDLAGVR LGNLYCDPLM TSTGHKISAR 60 QRWTPTPVQL QILERIFDQG YGTPSKQKIK EITSDLSQHG QISETNVYNW FQNRRAQSKR 120 KQLITMPNNA ESEVATEVES PKDQKTKSEN FLPQQNSASR PEDLCFQNPE IGSRLHFLDQ 180 QTHKEENIFP SDGGIKPSGN PSQVAFYAGN DHQIGKMEVP GSYNPYQHTE DYSMTG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.26732 | 0.0 | cell culture| fruit| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM473516 | 0.0 | AM473516.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X249614.21, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272863.1 | 1e-178 | PREDICTED: WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 8e-85 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | D7U464 | 1e-178 | D7U464_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0044g00160.t01 | 1e-179 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-87 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01026636001 |
Publications ? help Back to Top | |||
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