PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01025301001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C2H2

Protein Properties

Length: 361aa MW: 40701.9 Da PI: 7.7982

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01025301001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	172	191	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+F+r n++ H+ GSVIVT01025301001 172 FACPLCFKTFNRYNNMQMHM 191 78*****************9 PP
2	zf-C2H2	14.2	0.00012	256	278	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ GSVIVT01025301001 256 FMCRKCGKAFAVRGDWRTHEKNC 278 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.619	172	199	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.83	172	194	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	172	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	174	194	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.05E-6	239	276	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.7E-6	252	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	49	256	276	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.808	256	276	IPR007087	Zinc finger, C2H2
SMART	SM00355	290	282	305	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MTDPYSNYSN GWFNLNPLYH ISSSPSSSDQ SLCSPRYDFN KLYYNNFNTN NYHYSPPSPP 60 LREALPLLSL GPTRYDEQES SCNTAMEVDM NKGKEETTLS SSADDETVTV ALHLGLPSPS 120 STDLISRLSS SETEDKEEVT VASGYSSTGS TLIKGQYWIP TPSQILIGPT QFACPLCFKT 180 FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLKLPCFC CAPGCRNNID HPRSRPLKDF 240 RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCACGSDF KHKRSLKDHI 300 KAFGHGHAAY GIDCFEEEDE PASEIEQDNE SSHISNAMMN ILKTVVVPIC FHLLLNKSMR 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MTDPYSNYSN GWFNLNPLYH ISSSPSSSDQ SLCSPRYDFN KLYYNNFNTN NYHYSPPSPP  60
LREALPLLSL GPTRYDEQES SCNTAMEVDM NKGKEETTLS SSADDETVTV ALHLGLPSPS  120
STDLISRLSS SETEDKEEVT VASGYSSTGS TLIKGQYWIP TPSQILIGPT QFACPLCFKT  180
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLKLPCFC CAPGCRNNID HPRSRPLKDF  240
RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCACGSDF KHKRSLKDHI  300
KAFGHGHAAY GIDCFEEEDE PASEIEQDNE SSHISNAMMN ILKTVVVPIC FHLLLNKSMR  360
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.11905	0.0	fruit\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465887	0.0	AM465887.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X100517.5, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282950.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-139	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	F6GU81	0.0	F6GU81_VITVI; Uncharacterized protein
STRING	VIT_06s0004g01870.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-135	C2H2 family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01025301001

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]