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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019876001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 432aa MW: 46746 Da PI: 7.9585 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.2 | 3.6e-35 | 181 | 272 | 2 | 96 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsss 87 g++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + +s ss GSVIVT01019876001 181 SGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlK-----IPTS--SS 265 5899************************************************************998885553222210.....1111..11 PP TCP 88 gkaaksaak 96 + +++ + GSVIVT01019876001 266 S--NPEGEA 272 1..111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.6E-29 | 186 | 272 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.003 | 187 | 241 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MKNLFQTFSD TTRVAHWLRV ETTYHLWGGP LKTTHDKPIG GPRVGPNTCP YPIHRLTLLI 60 HSPPEKRSSV FSRTKQYFGS LFCGMASLQE HEIDQDDEVG TSDLSSSAGE PEEENNANDN 120 GMSKPSSSDQ TTTFQALSMK EEPVDSEPDA EQKPQAPSIG VVPVIQMQMP MPIPMPMPVS 180 SGRRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETVRWL LEHAEQAIIE 240 ATGTGTVPAI AVSVGGTLKI PTSSSSNPEG EAPKKRKRPA NSEFYDVNDG VSVSSGLAPV 300 GATAVAAAAP QGLVPIWAVG NAGMMIPPNA PQLWTISPSV SPVFNMSARP ISSFSTMAPC 360 VSSTTTTTNT SATKPQMLRD FSLEIYDKKE LQFMGRSGNQ QTQSSKIFVL PCNIHHSSTI 420 KPIFSVYFIV L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 278 | PKKRKRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1317 | 0.0 | flower| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM466417 | 0.0 | AM466417.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X250724.5, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282409.1 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
Refseq | XP_010661412.1 | 0.0 | PREDICTED: transcription factor TCP9 | ||||
TrEMBL | F6HUI6 | 0.0 | F6HUI6_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g04590.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3178 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 2e-60 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019876001 |