PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01019655001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 223aa MW: 25925 Da PI: 5.067 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.6e-18 | 45 | 98 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f++eq++ Le lFe++ p a+ +++ A++lgL rqV +WFqN+Ra+ k GSVIVT01019655001 45 RKRKFSEEQIRSLEFLFESEARPEAQLKQKVASELGLHPRQVAIWFQNKRARSK 98 4569************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 106.7 | 1.8e-34 | 45 | 136 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr++s+eq+++LE Fe+e + e + K+++a+eLgl+prqva+WFqn+RAR k+kq+E+dy++Lk++yd+l+ + e+Leke+++L+ +l++ GSVIVT01019655001 45 RKRKFSEEQIRSLEFLFESEARPEAQLKQKVASELGLHPRQVAIWFQNKRARSKSKQIEQDYAVLKASYDNLALQFESLEKENQNLAIQLQR 136 8**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.26E-15 | 35 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 40 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-14 | 43 | 104 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-12 | 43 | 101 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 45 | 98 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 47 | 107 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 75 | 98 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.1E-16 | 100 | 140 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MHVSAASIFC LSNFPVFFLF LFTFEEYFPA METSENIATS IRKIRKRKFS EEQIRSLEFL 60 FESEARPEAQ LKQKVASELG LHPRQVAIWF QNKRARSKSK QIEQDYAVLK ASYDNLALQF 120 ESLEKENQNL AIQLQRLRDG LEKPRGKEDE ESEIGYTNSE TKERYNPVLQ GRIEYFAEDT 180 HTPKMEEQTN SSLTSSADLG IFKSSCFQDQ SNCSSQWWEL WS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.8805 | 1e-81 | bud| fruit| inflorescence| pedicel |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468140 | 0.0 | AM468140.2 Vitis vinifera contig VV78X154850.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002280048.1 | 1e-139 | PREDICTED: homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | A0A438BV81 | 1e-137 | A0A438BV81_VITVI; Homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | F6HU74 | 1e-137 | F6HU74_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g02590.t01 | 1e-138 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 5e-38 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01019655001 |