PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ERF

Protein Properties

Length: 206aa MW: 22629.1 Da PI: 5.4102

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01018272001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.2	2.4e-19	82	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g GSVIVT01018272001 82 RYRGVRRRP-WGRYAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRIRG 132 7******.*******9987..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-30	82	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-23	82	141	IPR016177	DNA-binding domain
SMART	SM00380	7.0E-36	82	146	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-13	82	132	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.698	82	140	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-10	83	94	IPR001471	AP2/ERF domain
CDD	cd00018	7.83E-23	90	140	No hit	No description
PRINTS	PR00367	1.7E-10	106	122	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MYGNTTFNSD FALLESVRRY LLEDSDLPHP FSANAPADSA TNPTFTENWE NSPVLDAAAA 60 SGVVGEVKAE TQEAAGPEEW RRYRGVRRRP WGRYAAEIRD PAKNGARVWL GTYETAEDAA 120 LAYDRAAFRI RGSRALVNFP QRIGSGDPEP VRITPKRRSP QPSLSAAAAP ALKRRKGDVD 180 STVEVEAATE NVVDVFQLHQ LWVDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-34	81	147	4	70	ATERF1
3gcc_A	1e-34	81	147	4	70	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	175	KRRSPQPSLSAAAAPALKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM434733	0.0	AM434733.1 Vitis vinifera contig VV78X030850.7, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003633905.1	1e-147	PREDICTED: ethylene-responsive transcription factor 2
Swissprot	O80338	4e-44	EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBL	D7SLY3	1e-146	D7SLY3_VITVI; Uncharacterized protein
STRING	VIT_15s0021g01590.t01	1e-147	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47220.1	2e-23	ethylene responsive element binding factor 2

Link Out ? help Back to Top
Phytozome	GSVIVT01018272001
Entrez Gene	100853485

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]