PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01016182001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 354aa MW: 38878.3 Da PI: 8.6844 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSVIVT01016182001 175 YECKTCNRTFPSFQALGGHRASH 197 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 215 | 237 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSVIVT01016182001 215 HECSICGAEFTSGQALGGHMRRH 237 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.2E-13 | 174 | 199 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.16E-8 | 175 | 237 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 175 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 175 | 197 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 177 | 197 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-12 | 215 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.907 | 215 | 242 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 215 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 217 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MLPSVGSNSQ PHMWGARATR GCGTPTHLPH LASSNPISRF SLFHINFSLW WWWRKMEAQD 60 EYAHIVKGKR TKRLRPHSPL PFPIPTNSST AEGGDSSGGD DSNLMHIITN SNSASSPANS 120 FDLFQQDSSE EDEDLANCLI LLAQGQSREE SKVEDGGGSV AAAATATAKA GFYAYECKTC 180 NRTFPSFQAL GGHRASHKKP KARAFNSSSS KSRIHECSIC GAEFTSGQAL GGHMRRHRAP 240 IPIPSTNTTL SLNPLPGCLE PEQAKRPRTL LSLDLDLNLP APEDDHNHPR EPKFSFTPKQ 300 QQQQQQQQQQ QQQQPSPLMF PAPTLVDFSY KLTSKQAHSI PPNQYLKNSS TTQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.12012 | 0.0 | fruit| inflorescence |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427787 | 0.0 | AM427787.2 Vitis vinifera contig VV78X179731.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002265877.1 | 1e-141 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A5AIY0 | 1e-140 | A5AIY0_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0019g05170.t01 | 1e-140 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 4e-51 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01016182001 |