PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016182001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 354aa    MW: 38878.3 Da    PI: 8.6844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016182001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00084175197123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+++F++   L  H  +H
  GSVIVT01016182001 175 YECKTCNRTFPSFQALGGHRASH 197
                        99**********99999998887 PP
2zf-C2H2130.0003215237123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  F++   L  H+r+H
  GSVIVT01016182001 215 HECSICGAEFTSGQALGGHMRRH 237
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.2E-13174199IPR007087Zinc finger, C2H2
SuperFamilySSF576672.16E-8175237No hitNo description
PROSITE profilePS5015710.637175202IPR007087Zinc finger, C2H2
SMARTSM003550.052175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
PfamPF139121.2E-12215239IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907215242IPR007087Zinc finger, C2H2
SMARTSM003550.01215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLPSVGSNSQ PHMWGARATR GCGTPTHLPH LASSNPISRF SLFHINFSLW WWWRKMEAQD  60
EYAHIVKGKR TKRLRPHSPL PFPIPTNSST AEGGDSSGGD DSNLMHIITN SNSASSPANS  120
FDLFQQDSSE EDEDLANCLI LLAQGQSREE SKVEDGGGSV AAAATATAKA GFYAYECKTC  180
NRTFPSFQAL GGHRASHKKP KARAFNSSSS KSRIHECSIC GAEFTSGQAL GGHMRRHRAP  240
IPIPSTNTTL SLNPLPGCLE PEQAKRPRTL LSLDLDLNLP APEDDHNHPR EPKFSFTPKQ  300
QQQQQQQQQQ QQQQPSPLMF PAPTLVDFSY KLTSKQAHSI PPNQYLKNSS TTQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.120120.0fruit| inflorescence
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4277870.0AM427787.2 Vitis vinifera contig VV78X179731.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265877.11e-141PREDICTED: zinc finger protein ZAT5
TrEMBLA5AIY01e-140A5AIY0_VITVI; Uncharacterized protein
STRINGVIT_13s0019g05170.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-51C2H2 family protein