PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015189001
Common NameVIT_11s0016g02070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 514aa    MW: 57815.3 Da    PI: 7.1472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015189001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12337381554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR+++N++f+ Lr+llP+       K +Ka++L  + eY++sL
  GSVIVT01015189001 337 HMISERKRREKLNESFHALRTLLPPG-----SKKDKASVLSGTREYLSSL 381
                        8899********************95.....599**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.428332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.34E-12334385No hitNo description
SuperFamilySSF474591.96E-15335400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14336400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9337381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-13338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDSTFLLDEA TRTSFLRYVM ESFGCSYICL WSYQPHPSSC LRFLDGCYHE ENSNQPCSSS  60
GSLARRLFNE YCNSVFILEN DISRVPGEAF KNCVSYMELN ESQIGRMATA PAQMKFYQEA  120
RIKTAVFMGC RSGEIELGMS NPTMKNLEME TKNWFLEDFS QQFSPQFPQP ADQNRQSSSS  180
SRSMSMDSPE YPQALLFNIP NTSYIPEPLK EVSMEPALGP PSTTISTPHE QAMQALNQIR  240
SLNFPSLESE HAAMTRAILA VISSSPPSSS SSSHHPPQHN YVSAFRNYKK PSTAQLTASS  300
GRQSMLKRSM AYFKNLHLRR RQELIQGSHP SVSQLHHMIS ERKRREKLNE SFHALRTLLP  360
PGSKKDKASV LSGTREYLSS LKAQILELTQ RNQALEAQIN LKNEGNNEGG GDSSNERLSV  420
QITNASEPTP EERNIDLQVT VRADCSILDL VIRILDFLKR VKNVSLMSMN AETRMAETSP  480
INHVILRLKI EASEWDQSAF EEAIRRVVAD LAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERKRRE
2341346RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4645360.0AM464536.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X011061.22, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279486.20.0PREDICTED: putative transcription factor bHLH041
TrEMBLD7TB650.0D7TB65_VITVI; Uncharacterized protein
STRINGVIT_11s0016g02070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-62bHLH family protein