PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013388001
Common NameLOC100251229, VIT_18s0122g01140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WOX
Protein Properties Length: 280aa    MW: 31304 Da    PI: 6.1012
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-2196156257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  GSVIVT01013388001  96 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITTELtqhgQISETNVYNWFQNRRARSKR 156
                        89*****************99**************************************97 PP
2Wus_type_Homeobox101.17.8e-3395158265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  GSVIVT01013388001  95 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITTELTQHGQISETNVYNWFQNRRARSKRKQ 158
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-1891159IPR009057Homeodomain-like
PROSITE profilePS5007115.27392157IPR001356Homeobox domain
SMARTSM003892.4E-1394161IPR001356Homeobox domain
SuperFamilySSF466891.97E-1895159IPR009057Homeodomain-like
CDDcd000865.72E-1496158No hitNo description
PfamPF000462.9E-1996156IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMEWEAQELQ QQPQHHNQNQ NGVVVGGGSG GLYVKVMTDE QMELLRRQIS VYATICEQLV  60
EMHKAITTQQ DLAGMRLGNI YCDPLMASAG HKISSRQRWT PTPVQLQILE RIFDQGNGTP  120
SKQKIKEITT ELTQHGQISE TNVYNWFQNR RARSKRKQSV PLPNNADSEV ETDVESPKEK  180
KTKPDNIQSH ENSALGTENI YFQSPEMGSE MHCLDTQPNK GEPMFPSDRS LRSSGSLGHS  240
SLYETGVPNP RMDQLIGKVE VPGSFSPYRQ GGEGFDMVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.44800.0bud| fruit| inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4863670.0AM486367.2 Vitis vinifera contig VV78X200627.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272420.10.0PREDICTED: WUSCHEL-related homeobox 8
SwissprotQ5QMM39e-97WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A438ETD40.0A0A438ETD4_VITVI; WUSCHEL-related homeobox 8
TrEMBLD7UDB50.0D7UDB5_VITVI; Uncharacterized protein
STRINGVIT_18s0122g01140.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18731639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-80WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]