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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009865001 | ||||||||
Common Name | VIT_18s0001g13930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ARF | ||||||||
Protein Properties | Length: 908aa MW: 100064 Da PI: 4.988 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.9 | 1.7e-22 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++++++iyr++++r++lt+GW+ Fv+a++L++gD v+F + GSVIVT01009865001 148 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELIVRDLHDITYTFRHIYRGQPKRHLLTTGWSVFVSAKRLRAGDAVLFI--R 236 99*********************999*****9555554.49************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++v+r+ GSVIVT01009865001 237 DEKSQLLLGVRRA 249 5677789999997 PP | |||||||
2 | Auxin_resp | 104.9 | 9.4e-35 | 274 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPr.....astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPr a++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp++Wp+SkWr+L+ GSVIVT01009865001 274 AAHAAANRSPFTIFYNPRhafflACPSEFVIPLAKYRKSVYgTQISVGMRFGMMFETEESGKRRYMGTIVGISDLDPLSWPGSKWRNLQ 362 79****************55555579***************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-46 | 135 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 141 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.11E-21 | 147 | 248 | No hit | No description |
Pfam | PF02362 | 6.3E-20 | 148 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 148 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-23 | 148 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.4E-30 | 274 | 362 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.6E-10 | 796 | 884 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.937 | 797 | 881 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.9E-8 | 813 | 876 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 908 aa Download sequence Send to blast |
MMSSVEENIK AGGLVSGTQT TLIEEMKLLK EMQDQSGPRK AINSELWHAC AGPLVSLPQV 60 GSLVYYFPQG HSEQVAVSTK RTATSQIPNY PNLPSQLMCQ VHNVTLHADK DTDEIYAQMS 120 LQPVNSEKDI FPIPDFGLKP SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS 180 MQPPTQELIV RDLHDITYTF RHIYRGQPKR HLLTTGWSVF VSAKRLRAGD AVLFIRDEKS 240 QLLLGVRRAN RQQTSLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RHAFFLACPS 300 EFVIPLAKYR KSVYGTQISV GMRFGMMFET EESGKRRYMG TIVGISDLDP LSWPGSKWRN 360 LQVEWDESGC GDKQSRVSSW EIETPESLFI FPSLTSSLKR PMHAGFLGGE AEWGSLMKRP 420 FIRVLENGNG VLPYPTIPNI CSEQLMKMLL KPQLVNPPGT LTPAFQDSGV KAASLQEARI 480 IEGMIKQQPP PIPSENKLLQ NQNHPQPCLD QPDATNSDLP SQPNLVGQVQ PLNKLENQTP 540 SGNAEKSNIE PVHTADQLSQ LTSTGQGDEE KLAKSPKNPQ NLTNSFMQPH LESSIFHAQQ 600 ISAPPFDSNP NALSPYIDTD EWILYPSANQ SFGGVLRSPG PLSTFSLQDP SVVFPEAINP 660 TLPSMGQEIW DHQLNNAKYL SDDSNNQSGI YSCLNFDVSN GGSTVVDPSV SSTILDEFCT 720 FKDADFPDPS DCLVGNFSTS QDVQSQITSV SLADSQAFSR PDFLDNSGGT SSSNVDFDES 780 SLLQNSSWQQ VAPPPMRTYT KVQKMGSVGR SIDVASFKNY EELCSAIECM FGLEGLLNDQ 840 KGSGWKLVYV DYENDVLLVG DDPWKEFVGC VRCIRILSPS EVQQMSEEGM QLLNSTAIEG 900 INDSIRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 2 | 387 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1321 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM444797 | 0.0 | AM444797.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X074140.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003634382.2 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Refseq | XP_010664787.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | F6H071 | 0.0 | F6H071_VITVI; Auxin response factor | ||||
STRING | VIT_18s0001g13930.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8260 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009865001 |