PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007563001
Common NameLOC100263823, VIT_17s0000g09990
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 485aa    MW: 53467.4 Da    PI: 4.9188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007563001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.73.9e-13133155426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C+f++rtGtCk+G++CkF+H+
  GSVIVT01007563001 133 VDCSFYLRTGTCKFGSNCKFNHP 155
                        68********************8 PP
2zf-CCCH28.72.3e-09180203225
                        -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                        ++ +C++++rtG Ck+G  C+++H
  GSVIVT01007563001 180 GQTECKYYLRTGGCKFGKACRYNH 203
                        6789******************** PP
3zf-CCCH41.62e-13227250326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C++++rtG CkyG++C+F+H+
  GSVIVT01007563001 227 EKECPYYMRTGSCKYGANCRFNHP 250
                        689********************9 PP
4zf-CCCH30.85.1e-10366392127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f++tG Ck+ + Ck++H++
  GSVIVT01007563001 366 PGQPECSYFLKTGDCKFRAACKYHHPK 392
                        5789*********************96 PP
5zf-CCCH34.24.3e-11414437326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        + +C ++ r+G+Ck+G+ CkF H+
  GSVIVT01007563001 414 QNICTHYNRYGICKFGPACKFDHP 437
                        679********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.629129157IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6130157IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10133155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5135154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361178206IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4178205IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7180203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5181205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4184204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6223251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929224252IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6226251IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-11227250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6230249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497365393IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-4365392IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6367392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5409437IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4411438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699411439IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8414437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4416436IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDGSENTVSI PNEDELGLGL RPSSPAQPDV EKLNQEFLSL VLEQHEPVVE SLALEQHEPV  60
VESLALEQHE PVVESLALEE REEEKEEDEE SDSNGEVKAS DDEEEQCENL EDESAAKDDK  120
SARFQYPVRP DAVDCSFYLR TGTCKFGSNC KFNHPIRRKN QVAKEKVKEK EKEEFPERPG  180
QTECKYYLRT GGCKFGKACR YNHTKAKPSA VPVLELNFLG LPIRMGEKEC PYYMRTGSCK  240
YGANCRFNHP DPTAAGGYES PSGYGNGGSV PLQGASQSNM ASWSSPRALN EPAPFVPIMF  300
SPTQGVPPPN PEWNGYQAPL YPPPPPERSM HPPPAFVINN TATDANVYGH HQQQQQSLIE  360
DFPERPGQPE CSYFLKTGDC KFRAACKYHH PKNRIPKSPP CTLSDKGLPL RPDQNICTHY  420
NRYGICKFGP ACKFDHPVNY GNSASAPSAE SGQDQPPPFG GSVTADGVRP GSGNGNEILI  480
QQPV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.84940.0cell culture| flower| fruit| inflorescence| pedicel| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4668320.0AM466832.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X011128.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277300.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-133C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7SHC40.0D7SHC4_VITVI; Uncharacterized protein
STRINGVIT_17s0000g09990.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]