PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007552001
Common NameLOC104882266, VIT_17s0000g10080
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 542aa    MW: 60966.2 Da    PI: 6.6933
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007552001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.5e-1732122199
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        ffkv+       s +l lp kfa++   ++ e   +  led+sgr+We+++  ++  g+  + +GW  F+ +++L+ gDfvvF+++  s f 
  GSVIVT01007552001  32 FFKVM--IGDKFSEILFLPPKFARTVsALVDE---KTHLEDSSGRQWEITV--SNLNGSLAFHQGWHAFALDHRLEIGDFVVFHYIMGSHF- 115
                        77777..55566678********999755543...589*************..9999999************************9976777. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                           +++++
  GSVIVT01007552001 116 -ITQIYDR 122
                        .7777765 PP
2B341.52.4e-134715382796
                        ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        g  k e k ++l+d++ +sW v +    ++g   lt+GW++F +an+++ gD +vF+l+++ ++ + v++
  GSVIVT01007552001 471 GRTKMERKVVVLQDPDKKSWPVLY--HERQGFKALTSGWEDFSRANNIQPGDECVFTLENELKGIYAVRI 538
                        555667789***************..9999999************************9988666566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2028125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2029125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36530123IPR003340B3 DNA binding domain
CDDcd100171.07E-1731121No hitNo description
SMARTSM010195.0E-732123IPR003340B3 DNA binding domain
PfamPF023629.8E-1532122IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956443541IPR003340B3 DNA binding domain
SMARTSM010190.0012449539IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-14465530IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-11469538IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13475529IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-12476538No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDCKEEACLE CTKQCLLLHK KKKRPIPNIS SFFKVMIGDK FSEILFLPPK FARTVSALVD  60
EKTHLEDSSG RQWEITVSNL NGSLAFHQGW HAFALDHRLE IGDFVVFHYI MGSHFITQIY  120
DRTGCEKPKY SENGQHKKIT RNKRSPISKD RAFRTIDKGS INEQVSSTSV LSGSDIGIIQ  180
SQCDATDVEK VPMIVENTSN CKNSNGKLKS VCKAEYVEEP YYIIDRDLGY KRGEYRSSIF  240
DLSNFEMQNN EFGADGSKKI VAGVEKSPHH ADKLLISQTE AMVADVYTVA EEVGRKVVAS  300
DASKFETGKK KDSDVVEKII LRHNKDSCDN KVSGQFLTTS AEEPGENGKD SSDLGNEGIK  360
EHQMAEMKII NTHSIDMKGL KKECVEMTSK MHGLEEMIGE RALELMKGLH HHSWNPTRKD  420
NDEVYEVVKT EAVDFIGSPL PIAANLSCIV GTDDRSFLEL PASLPSFSYR GRTKMERKVV  480
VLQDPDKKSW PVLYHERQGF KALTSGWEDF SRANNIQPGD ECVFTLENEL KGIYAVRIVQ  540
K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4565180.0AM456518.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X128587.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663041.10.0PREDICTED: uncharacterized protein LOC104882266 isoform X1
RefseqXP_010663042.10.0PREDICTED: uncharacterized protein LOC104882266 isoform X1
RefseqXP_019081883.10.0PREDICTED: uncharacterized protein LOC104882266 isoform X1
RefseqXP_019081884.10.0PREDICTED: uncharacterized protein LOC104882266 isoform X1
RefseqXP_019081885.10.0PREDICTED: uncharacterized protein LOC104882266 isoform X1
TrEMBLD7SHB60.0D7SHB6_VITVI; Uncharacterized protein
STRINGVIT_17s0000g10080.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-11B3 family protein