PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003977001
Common NameLOC100257783, VIT_14s0219g00170
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 418aa    MW: 46225.6 Da    PI: 6.8039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003977001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.5e-116485526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        C+++ rtG Ck+G +CkF+H+
  GSVIVT01003977001 64 DCPYYVRTGSCKFGLNCKFNHP 85
                       6********************9 PP
2zf-CCCH30.65.8e-10108130527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C++++ +G CkyG++C+++H++
  GSVIVT01003977001 108 ECKYYLTGGGCKYGNSCRYSHSK 130
                        7********************95 PP
3zf-CCCH36.77e-12151174326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C++++rtG C yG++C+F+H+
  GSVIVT01003977001 151 EKECPYYMRTGSCGYGANCRFHHP 174
                        679********************9 PP
4zf-CCCH28.42.7e-09304329227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        + ++C++f++tG Cky + C+++H++
  GSVIVT01003977001 304 GKPECDYFMKTGDCKYKSACRYHHPK 329
                        789*********************96 PP
5zf-CCCH18.82.8e-06350375227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        + ++C ++  +G+CkyG  C F H+p
  GSVIVT01003977001 350 GKKICWHYESYGICKYGRACLFDHPP 375
                        6678999*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.1E-55986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0045987IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-56287IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-96485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-46584IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615103131IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6107131IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6109131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6147175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643148176IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6150175IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9151174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5154173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77302330IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4302329IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-7304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5307330IPR000571Zinc finger, CCCH-type
SMARTSM003560.025348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648348376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5350376IPR000571Zinc finger, CCCH-type
PfamPF146080.36353374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGSCEDPVSR QNTHDQIELG LMYPKPDPDP DPDAELLVQQ FENVALKDTE ETEIQYPLRP  60
YAQDCPYYVR TGSCKFGLNC KFNHPVTRTG QVGKERENEG EGLSEKIECK YYLTGGGCKY  120
GNSCRYSHSK ETNELATLEY NFLGLPMRVG EKECPYYMRT GSCGYGANCR FHHPDPTSVG  180
GSEPNGNGES VGGFDSLGNH NGESTILNLS GASQPSMPSW SSHMLSNKRV PYSDNRSSYV  240
PAMHSVAQGI HPNLDLNGYQ APIHSQGMPR HLHSGLTLNK LMKKSDVSQH YEQTQVEEFP  300
ERPGKPECDY FMKTGDCKYK SACRYHHPKS RVPGLPVCAL SDKGLPLRPG KKICWHYESY  360
GICKYGRACL FDHPPNHTPS SFPVGSKLDP PLGHNSATVG GNRMAGCQDE IQASGWD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.74830.0bud| cell culture| fruit| inflorescence| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4873530.0AM487353.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X154115.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268612.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM48e-97C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7SPX80.0D7SPX8_VITVI; Uncharacterized protein
STRINGVIT_14s0219g00170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9141714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-99C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]