PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01001371001
Common NameLOC100263099, VIT_13s0156g00340, VITISV_024454
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 584aa    MW: 65272.3 Da    PI: 10.2071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01001371001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-123182347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                        WTt+E++ll++avk++G  +W+++a +++       +  t+ +c+ +++++
  GSVIVT01001371001 31 TWTTWEELLLACAVKRHGFQNWDSVAMEIQtrsslphLLTTAQNCQQKYHDL 82
                       7*****************************8888888777888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.472483IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-52683IPR009057Homeodomain-like
SuperFamilySSF466891.95E-62785IPR009057Homeodomain-like
SMARTSM007178.2E-72885IPR001005SANT/Myb domain
PfamPF002496.0E-113182IPR001005SANT/Myb domain
CDDcd001671.34E-73183No hitNo description
SMARTSM002975.0E-15235346IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-14244358IPR001487Bromodomain
SuperFamilySSF473702.62E-16245348IPR001487Bromodomain
CDDcd043691.56E-15248341No hitNo description
PfamPF004392.4E-12255330IPR001487Bromodomain
PROSITE profilePS5001412.25256327IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSKNTPIINV SNDDNNIIID MARTEKRDND TWTTWEELLL ACAVKRHGFQ NWDSVAMEIQ  60
TRSSLPHLLT TAQNCQQKYH DLKRRFTATA KDNDAETQSQ NQVRDETDTI PWLEELRKLR  120
VAELRNEVHR SDVSILSLQL KVKRLEEERE QSTKENDNDV VKPDLDDEVK EERSKDEESD  180
RENRSVNESN STGVKGENIE TAVEEAAREP EPTEPVKRIG GSLKGRDKGE QRPVSPATKR  240
ICVKSQPLVS FLEIIRSHKH SSLFERRLET QETEVYKSIV RQHVDLESIQ TKLDDGTYSS  300
SPRAFYRDLL LLFTNAIVFF PKASAEALAA GELRAMVLNE VRKQQPPAPE HLLLPQPKPE  360
LERSDSLLAK QKSSAPIIVC RKRSSISAKA SSFGVKAGES RSEEKPAVDI KPSVREEQSL  420
VKAGTKEKST TGVRSLRRGG KNRSGNLNKN QSTSTNHGSS DKGETPKAEK KKADASASAK  480
KRGAADFLKR IKKNSPMDMG KSTVNDTRSG RGGGGGEEKR KRNEKGDGRR DRVLRQSGGG  540
KQGKDESSPS KRSVGRPPKK AAADTGKRGR EMFMFVVMII WSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.100220.0bud| flower| fruit| leaf| pedicel| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4313180.0AM431318.2 Vitis vinifera contig VV78X241236.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268328.10.0PREDICTED: uncharacterized protein LOC100263099
TrEMBLA0A438IAB10.0A0A438IAB1_VITVI; Uncharacterized protein
TrEMBLA5AP960.0A5AP96_VITVI; Uncharacterized protein
STRINGVIT_13s0156g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-50DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]