PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 327aa MW: 36982.7 Da PI: 7.4194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP22660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.8e-06	163	182	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ GSMUA_AchrUn_randomP22660_001 163 FPCPVCSKTFNRYNNMQMHM 182 89*****************9 PP
2	zf-C2H2	14.7	9.1e-05	247	269	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ GSMUA_AchrUn_randomP22660_001 247 FMCRKCGKAFAVRGDWRTHEKNC 269 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.99E-5	159	185	No hit	No description
Pfam	PF13912	1.1E-4	163	182	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.097	163	190	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.0E-7	163	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.057	163	185	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.14E-6	228	267	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.6E-6	243	267	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	247	267	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	247	267	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MADPYANSLQ GFFNCHPFTS HPSFSALPLP RHNILTNFTN YATSHLPSPL PPPPPASPPL 60 REALPLLNLA PTPHHHQEEE EASCSFLEED AETATDEKKK VSQDDGENEE DAVTVALHIG 120 LPKDRDHDLG DDVPLGYPAI GRLRRGQYWI PTPSQILIGP TQFPCPVCSK TFNRYNNMQM 180 HMWGHGSQYR KGPESLRGIQ PTAMLRLPCY CCAPGCRNNI DHPRSKPLKD FRTLQTHYKR 240 KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IKAFGSGHSA 300 YGIDCLEEDD ELSSEIEQDS NHRHQLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387999.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-125	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	M0UBH4	0.0	M0UBH4_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP22660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-117	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]