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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSMUA_AchrUn_randomP18320_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
C2H2 |
| Protein Properties |
Length: 344aa MW: 38660.7 Da PI: 7.9872 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_AchrUn_randomP18320_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.4 | 0.00011 | 144 | 162 | 1 | 19 |
EEETTTTEEESSHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrH 19
++Cp C k+F+r n++ H
GSMUA_AchrUn_randomP18320_001 144 FSCPVCYKTFNRYNNMQMH 162
89****************9 PP
|
| 2 | zf-C2H2 | 15.1 | 6.9e-05 | 228 | 250 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F k + ++H +++
GSMUA_AchrUn_randomP18320_001 228 FMCRKCGKAFAVKGDWRTHEKNC 250
89*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MADPYSNFYK LYSHYPLISD PSFPPAAFQS YSFSTHSSLP PHPPSPPLRE ALPLLSLRPT 60
RHQEEEEDTS CSASAGGSRN KAARDDDEAD DEVGGVTVAL HIGLPSPGDD VVTSGYPSNS 120
LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHKWGHGSQY RKGPESLRGI 180
QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVK 240
GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGHGHA AYGINCFEEE DDPSSEIEQD 300
CHQLNECHRG PSPVATFRAH MNCLISFPCS DELVCPSAVL YFLF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC226039 | 1e-138 | AC226039.1 Musa acuminata clone BAC MA4-3G18, complete sequence. |
