PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP01830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 475aa    MW: 53220.5 Da    PI: 8.6832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP01830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.9e-13277323455
                                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_AchrUn_randomP01830_001 277 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 323
                                    799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4336198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19276342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-14276327No hitNo description
Gene3DG3DSA:4.10.280.104.6E-19277336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10277323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-17279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAVAVLGHQA FHFLSSRHET SSDSQLTAVG CGDAGLQNKL QDLVEGRRSA ASSSWAYAIF  60
WQISRSESGD LVLSWGDGHC RELEDAEEVD GGSRSHPLEA TRQEMRKRMY FLASMYFSFP  120
KGEDAPGRAL ASGKHIWISE AALASPACAN YCVRAFLARS AGFRTIVFVP FDAGVLELGS  180
VDPVLESFET LHKIRSIFGN DLNLGRAQLD GRATSAKFGN SVAYVRHVNG FVRDDRPRTN  240
PFQPQKLQPQ QQQRQQPLSQ PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV  300
PNISKMDKAS LLGDAISYIT ELQKKLKEME AEREMWGDPC LMDYKRRSQC PDIDVQVAQG  360
EVIVRVTCPL ESHPVSEVIQ AFKNSQINVA DSCVTSNNDS VLHTFVVKSP VAEQLTKEKL  420
IAAFNSILIS CILILFPKIR YWLRFLICSS LLFFSRIATD VGGSSVHGEH KWRSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28271333264Transcription factor MYC2
5gnj_B7e-28271333264Transcription factor MYC2
5gnj_E7e-28271333264Transcription factor MYC2
5gnj_F7e-28271333264Transcription factor MYC2
5gnj_G7e-28271333264Transcription factor MYC2
5gnj_I7e-28271333264Transcription factor MYC2
5gnj_M7e-28271333264Transcription factor MYC2
5gnj_N7e-28271333264Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385592.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLM0U5J50.0M0U5J5_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP01830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-77bHLH family protein