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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P30670_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Nin-like | ||||||||
Protein Properties | Length: 100aa MW: 11559.6 Da PI: 10.9087 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.2 | 2.2e-25 | 8 | 58 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+++y +lpi++AAkeL++c+T+LK+ CR++G+ RWP+Rkiks+ GSMUA_Achr8P30670_001 8 TRRLHLKDVANYVHLPITEAAKELQICPTALKKVCRKHGMLRWPYRKIKSI 58 67899********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.507 | 1 | 80 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-22 | 11 | 58 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MMDQRERTRR LHLKDVANYV HLPITEAAKE LQICPTALKK VCRKHGMLRW PYRKIKSIDR 60 TISNLQRELR SGTAEGATEV EARIERLVAQ RARICAGLPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415647.1 | 7e-63 | PREDICTED: uncharacterized protein LOC103996450 | ||||
TrEMBL | M0TV19 | 5e-67 | M0TV19_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P30670_001 | 9e-68 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8055 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 2e-15 | NIN like protein 7 |