PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P14110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 398aa    MW: 42615.6 Da    PI: 7.4732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P14110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.1e-15173216956
                    AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            +  +g+WvAeIr p++   r r +lg+f taeeAa a+++ + kl+ge
  GSMUA_Achr8P14110_001 173 R-HWGKWVAEIRLPRN---RSRLWLGTFNTAEEAALAYDREAFKLRGE 216
                            4.4**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.467158223IPR001471AP2/ERF domain
PRINTSPR003671.3E-5167178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-26171224IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-19171224IPR016177DNA-binding domain
CDDcd000181.62E-26171225No hitNo description
SMARTSM003802.0E-30171229IPR001471AP2/ERF domain
PfamPF008471.4E-8173216IPR001471AP2/ERF domain
PRINTSPR003671.3E-5189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEGSDGGGRQ KGVQRTSVQP RPLKKIRSPD RRHHYSSTST SSSSSSSQCS SNSNPVSSSF  60
SGPPVSSSST LYSKPLFPFA SAGSSRAVVD PTLSPPARSS LHHQPPPWQQ QQMISFGRHH  120
PHQIRTYPPS PPFMTTEEAA ATQQQLQHRV YQEQYLLRYW SEALNLNPRA RMRHWGKWVA  180
EIRLPRNRSR LWLGTFNTAE EAALAYDREA FKLRGENAKL NFPHLFLGTG GGSGDRGGAS  240
CSSSSSSPPA TPEEARPQTI HHQSQPRPPP PVAFETTGVT ATVIGSSSSG DGSASGLDES  300
GGSEPTAPET TTPEMVWGNT AAAAEEWFST WGPGSSIWDD IDGANSLLLH SRFTSFADMD  360
PSNAAPPSSA ATTTASPDAD ASSTAGPGPS SSVFLWKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-15171223760ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413180.11e-159PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLM0TQB40.0M0TQB4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P14110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.15e-29ERF family protein