PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P05350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 451aa    MW: 49300.5 Da    PI: 5.7659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P05350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-13296342455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr8P05350_001 296 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 342
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-4036197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-15295346No hitNo description
SuperFamilySSF474592.75E-19295357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-19296355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10296342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-17298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0043386447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MALAVLGHQA FDYLNARHAA SSDGHLTAVG GGDADLQTKL QDLVEGPGSV AWAYAIFWQI  60
SRSDSDELVL GWGDGHCIET GDEEEEEEGC GSRRNPLDGA HQKMRKRMYF LASMYFSFPK  120
GEDAPGRALE SGKYIWISEA VLASPACSNH YVRAFLARTA GFRTIIFIPF ESGVLELGSV  180
DPVPESFEAL YMIRSLFGHG LSKGEAAPGE KTDENNGPQA LPRPLPPSGQ IDFSSAAAAA  240
ANPAPAGVLI GRAGAVDSEL SDVEAPCKEH KPGGTEERRP RKRGRKPANG REEPLNHVEA  300
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAISYITE LQKKLKEMEA EREMWGDPSR  360
VDHKRPPPHC PEIDIQTAQD EVIVRVNCPL DRHPVSQVIQ ALKDSQIDVV DSKVAATNDS  420
VLHTFVVKSP AAEQLTKEKL IAALAHEFRA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28290352264Transcription factor MYC2
5gnj_B1e-28290352264Transcription factor MYC2
5gnj_E1e-28290352264Transcription factor MYC2
5gnj_F1e-28290352264Transcription factor MYC2
5gnj_G1e-28290352264Transcription factor MYC2
5gnj_I1e-28290352264Transcription factor MYC2
5gnj_M1e-28290352264Transcription factor MYC2
5gnj_N1e-28290352264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277285RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412249.11e-145PREDICTED: transcription factor bHLH13-like
RefseqXP_009412250.11e-145PREDICTED: transcription factor bHLH13-like
RefseqXP_009412251.11e-145PREDICTED: transcription factor bHLH13-like
RefseqXP_018686315.11e-145PREDICTED: transcription factor bHLH13-like
SwissprotQ9ZPY81e-113AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLM0TMT80.0M0TMT8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P05350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.12e-82bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]