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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr7P18930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 15859.7 Da PI: 10.1328 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 11 | 60 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f taeeAa+a++ a+ +++g GSMUA_Achr7P18930_001 11 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFNTAEEAARAYDMAAIEFRG 60 8********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-14 | 11 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.211 | 11 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-23 | 11 | 69 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 11 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-36 | 11 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.00E-29 | 14 | 68 | No hit | No description |
PRINTS | PR00367 | 1.4E-11 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MQVRRRKKKN KYRGVRQRPW GKWAAEIRDP RRAVRKWLGT FNTAEEAARA YDMAAIEFRG 60 ARAKLNFPFP EQPPALGGDQ GTSQSTSLSS SHQPQQQGFG EQQKQQVVMD HQGQELIDLW 120 AGIQDLMALD DEELYNGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 8 | 69 | 2 | 64 | ATERF1 |
3gcc_A | 7e-22 | 8 | 69 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727527 | 2e-51 | KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410105.1 | 2e-99 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | M0TIT0 | 4e-98 | M0TIT0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P18930_001 | 6e-99 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-24 | ethylene-responsive element binding protein |