PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P35730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 491aa    MW: 54750 Da    PI: 7.0873
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P35730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13333379455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+       K +Ka+ L  A+ YI +Lq
  GSMUA_Achr6P35730_001 333 NHVEAERQRREKLNQRFCALRAVVPNV-----SKTDKASLLADAIAYITELQ 379
                            799***********************6.....5*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-4553234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.361329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-19332397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-13332383No hitNo description
Gene3DG3DSA:4.10.280.104.6E-19333394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11333379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.81E-5416484No hitNo description
PROSITE profilePS516718.864419491IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRWETGMGSR CSEEDRAEAA AVLGGRALDF LLARSHVSSS DHLDAVGEGV PDLQTKLQSL  60
VEGHGSVWAC AVFWQISRSR SGELVLRWGD GHCRELVSGV DDDGTNGRYP QGAGPLHRMR  120
KRVLERLHVL SGGSHEENYA LCRDRLADSE MYFLASMYFL FHPGEGAPGR ALLSENHIWI  180
PETAFPGADY FVRAFLARTA GVRTVVLIPI DAGVLELASF DAVPESPDEL HRIRADLNVA  240
PAQMSMKVPN WNLNHSVEEA TPVHEACLRH GSGVARDEDP VTNQFLAEKQ QQPKPQCSSS  300
KSTGRLGTPA TPEDRKPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFC ALRAVVPNVS  360
KTDKASLLAD AIAYITELQR KLKEMEAEKE MLRQPAFMDH DSHTHRPKLN VELVQDELMV  420
RLSCPSHTHP VSGVIRALNE SHINVVESKV VVSDDTVMHT FVVESQQLTR EKLLAAITRE  480
VNRRKPQCLS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26327389264Transcription factor MYC2
5gnj_B2e-26327389264Transcription factor MYC2
5gnj_E2e-26327389264Transcription factor MYC2
5gnj_F2e-26327389264Transcription factor MYC2
5gnj_G2e-26327389264Transcription factor MYC2
5gnj_I2e-26327389264Transcription factor MYC2
5gnj_M2e-26327389264Transcription factor MYC2
5gnj_N2e-26327389264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314322RKPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407318.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLM0TD160.0M0TD16_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P35730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-79bHLH family protein