PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P29500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 239aa MW: 25484.5 Da PI: 9.7116

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P29500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.2	3.2e-32	17	75	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++c+rC s++tkfCy+nny++sqPry+C++C+r+Wt+GG+lrnvP Gg+++k+k +s GSMUA_Achr6P29500_001 17 PLVPCARCGSSDTKFCYFNNYNTSQPRYYCRTCKRHWTHGGTLRNVPEGGSSKKSKLKS 75 5689**************************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	25.63	19	73	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-16	19	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-29	19	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEQQQQLQKR QRSQQPPLVP CARCGSSDTK FCYFNNYNTS QPRYYCRTCK RHWTHGGTLR 60 NVPEGGSSKK SKLKSSASSS SSPSLKLPQA QAMVDQMAAV AVGTSTNPDR AAMPPPLLYG 120 GGARAAGWGG ILGDEPALPA FNSGGLDGDF GPSNPATTPS GFNLLQQLVQ QPRLTLALHR 180 NLFMFQQQMN APAFATAAPA IVAADAAATT EESNQNYHNN SRMSNMSGAP HPPPSSSSM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018683412.1	1e-177	PREDICTED: dof zinc finger protein DOF5.3-like
Refseq	XP_018683413.1	1e-177	PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBL	M0TB95	1e-176	M0TB95_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P29500_001	1e-176	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-21	OBF binding protein 1