PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P18670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24560.2 Da    PI: 7.5833
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P18670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien++nrqvtfskRrngi+KKA E+S+LCda v+v+ifs +gk+ +y++
  GSMUA_Achr6P18670_001  9 KRIENSTNRQVTFSKRRNGIIKKAREISILCDAHVSVVIFSGSGKMSDYCT 59
                           79***********************************************96 PP
2K-box77.14.5e-2671168198
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yq++sg++l++a++esl+ e++++kke++n+q e+Rhl+GedL+sL  keL  +e+ L+ +l ++R+k++e+++++ ++ +  e+e++
  GSMUA_Achr6P18670_001  71 YQQNSGRKLWDAEHESLSAEIDRIKKENDNMQIELRHLKGEDLNSLYPKELIPIEEGLQIGLASVRDKQMEIWKMHKKNEKLLEEENE 158
                            8999************************************************************************************ PP

                  K-box  89 eenkaLrkkl 98 
                            + + +L+++ 
  GSMUA_Achr6P18670_001 159 QLTCMLHHQQ 168
                            ******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.80E-43280No hitNo description
SuperFamilySSF554555.23E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1783164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.47884170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISILCD AHVSVVIFSG SGKMSDYCTP  60
TTALPKILER YQQNSGRKLW DAEHESLSAE IDRIKKENDN MQIELRHLKG EDLNSLYPKE  120
LIPIEEGLQI GLASVRDKQM EIWKMHKKNE KLLEEENEQL TCMLHHQQRA MEGNVMELEV  180
GYHQRDCEFA PQMTMAFRVQ PIQPNLQENN K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-17175173MEF2 CHIMERA
6byy_B4e-17175173MEF2 CHIMERA
6byy_C4e-17175173MEF2 CHIMERA
6byy_D4e-17175173MEF2 CHIMERA
6bz1_A4e-17175173MEF2 CHIMERA
6bz1_B4e-17175173MEF2 CHIMERA
6bz1_C4e-17175173MEF2 CHIMERA
6bz1_D4e-17175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0056030.0DQ005603.1 Musa ornata PISTILLATA-like protein (PIb) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404965.11e-157PREDICTED: MADS-box transcription factor 2-like
SwissprotQ0HA251e-105MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLM0T8651e-156M0T865_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P18670_0011e-157(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]