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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P01230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24540.2 Da PI: 9.6161 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA E+S+LC+a+v+v+ifss+gk+ ey+s GSMUA_Achr5P01230_001 9 KRIENSTNRQVTFSKRRNGIIKKAREISILCEAQVSVVIFSSSGKMSEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 79.6 | 7.8e-27 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 yq++sg++l++ak+esl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+ +l+++R+k++e+++ + ++ + e+e++ GSMUA_Achr5P01230_001 71 YQQNSGRKLWDAKHESLSAEIDRIKKENDNMQIELRHLKGEDLNSLNPKELIPIEDALQIGLTSVRDKQMEIWKLHKKNERLLEEENK 158 8999************************************************************************************ PP K-box 89 eenkaLrkk 97 + + +L+++ GSMUA_Achr5P01230_001 159 QLTYMLHHQ 167 **9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.525 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-36 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.16E-41 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-18 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.172 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISILCE AQVSVVIFSS SGKMSEYCSP 60 AATLPKILER YQQNSGRKLW DAKHESLSAE IDRIKKENDN MQIELRHLKG EDLNSLNPKE 120 LIPIEDALQI GLTSVRDKQM EIWKLHKKNE RLLEEENKQL TYMLHHQQLA MDGNVRELEI 180 GYHQKGREFA PHMTTMAFHV QPIQPNLQEN K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU869311 | 0.0 | EU869311.1 Musa acuminata AAA Group MADS-box protein MADS6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399166.1 | 1e-156 | PREDICTED: MADS-box transcription factor 2 | ||||
Swissprot | Q0HA25 | 1e-106 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | D4HM44 | 1e-155 | D4HM44_MUSAC; MADS-box protein MADS6 | ||||
TrEMBL | M0SUQ2 | 1e-155 | M0SUQ2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P01230_001 | 1e-155 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 6e-78 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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