PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P15140_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 149aa MW: 16195.5 Da PI: 9.5566

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P15140_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	45	101	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 al+cprC+s++tkfCy+nny+++qPr+fCkaC+ryWt+GG+lrnvPvG+grrk +++ GSMUA_Achr4P15140_001 45 ALPCPRCKSKETKFCYFNNYNVNQPRHFCKACHRYWTAGGTLRNVPVGAGRRKVRRA 101 679**************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-31	46	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	46	100	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-24	46	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MGEVDEAASI KLFGAVILKE DRQAKEKKEA QDEAAAAREA AAAVALPCPR CKSKETKFCY 60 FNNYNVNQPR HFCKACHRYW TAGGTLRNVP VGAGRRKVRR APHGGVSATA GPATCVLEHP 120 SPPYLAARWL LRPEAPPRAD YGTFNGGLC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ969263	6e-52	AJ969263.1 Hordeum vulgare dof17 gene for dof zinc finger protein 17, cultivated variety Bomi.
GenBank	AK360617	6e-52	AK360617.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121P17.
GenBank	AK365055	6e-52	AK365055.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030J14.
GenBank	HG670306	6e-52	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395706.1	3e-80	PREDICTED: dof zinc finger protein DOF1.5-like
Swissprot	O22967	2e-34	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	M0SP29	1e-105	M0SP29_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P15140_001	1e-106	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	7e-33	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]