PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P01560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 322aa    MW: 36375.2 Da    PI: 8.0074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P01560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05154173120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++Cp C k+F+r  n++ H+
  GSMUA_Achr4P01560_001 154 FSCPVCYKTFNRYNNMQMHM 173
                            89*****************9 PP
2zf-C2H215.26.4e-05238260123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  k + ++H +++
  GSMUA_Achr4P01560_001 238 FMCRKCGKAFAVKGDWRTHEKNC 260
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.57E-5150176No hitNo description
PROSITE profilePS501579.743154181IPR007087Zinc finger, C2H2
SMARTSM003550.45154176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-6154173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-6219258No hitNo description
Gene3DG3DSA:3.30.160.605.0E-6234258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787238258IPR007087Zinc finger, C2H2
SMARTSM0035550238258IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MANPYTKFFK LYNHCPFLSD PSSTPTATQS YSFSPHCYSN SFPRQLPSSP LKEALPLLSL  60
CATRHQEEEE EEEEEGTSCD ASIGGGKKKA VRVDDEAADE VDAVTVALHI GLPSPVDDVV  120
TLGYASGNHP LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHMWGHGSQY  180
RKGPESLRGI QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK DFRTLQAHYK RKHGIKPFMC  240
RKCGKAFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGQGHA AYGINWFENE  300
DDPSSEIEHD CHQPKELEKL TC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395241.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-124ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM0SK730.0M0SK73_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P01560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]