PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P03850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 323aa    MW: 36819.4 Da    PI: 7.3679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P03850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05159178120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++Cp C k+F+r  n++ H+
  GSMUA_Achr3P03850_001 159 FSCPVCYKTFNRYNNMQMHM 178
                            89*****************9 PP
2zf-C2H215.26.3e-05243265123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  k + ++H +++
  GSMUA_Achr3P03850_001 243 FMCRKCGKAFAVKGDWRTHEKNC 265
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.57E-5155181No hitNo description
PROSITE profilePS501579.743159186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-6159178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576678.44E-7224263No hitNo description
Gene3DG3DSA:3.30.160.605.0E-6239263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787243263IPR007087Zinc finger, C2H2
SMARTSM0035550243263IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MADPYTNFSR GFYNHYPFTS TPPPPPVATQ SYSFITHSYT SSFLPRHPPS PPLREALPLL  60
SLSPTRHREE EEEEEEEEEE DTSCSASAEG AKNKAARIED EADDEVDAVT VALHIGLPSP  120
GAVDLISRLP STSEDHRRLN KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG  180
HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNIDHPR SKPLKDFRTL QTHYKRKHGI  240
KPFMCRKCGK AFAVKGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GRGHAAYGIN  300
CLEEEDDPSS EIEQDCHQPH EQR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260391e-153AC226039.1 Musa acuminata clone BAC MA4-3G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009390641.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM0SBK30.0M0SBK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P03850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]