PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P21900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 154aa    MW: 17559.8 Da    PI: 5.0941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P21900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1782124248
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                            +y+G+r+++ +g+W+AeIrdp     +  +++lg+f taeeAa+a++ 
  GSMUA_Achr2P21900_001  82 QYRGIRQCP-WGKWAAEIRDPH----KgVHVWLGTFNTAEEAARAYDV 124
                            6********.**********72....35******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.49382140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2482133IPR001471AP2/ERF domain
SMARTSM003805.1E-2282140IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1882128IPR016177DNA-binding domain
CDDcd000182.29E-2382127No hitNo description
PRINTSPR003672.6E-108394IPR001471AP2/ERF domain
PfamPF008478.7E-1183124IPR001471AP2/ERF domain
PRINTSPR003672.6E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MYGNAIISDF IPTPALWPGK PKRGKRLMVE DQKEGKADFQ EFNDESEEDE FDAMRFSFGS  60
KSIISRAFTI ALQIFLKKKK NQYRGIRQCP WGKWAAEIRD PHKGVHVWLG TFNTAEEAAR  120
AYDVEALPAE ENAAAKLSEE LSAYEIQTIY EVPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1579127251ATERF1
3gcc_A5e-1579127251ATERF1
5wx9_A6e-15811341367Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380143.17e-36PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLM0SA311e-110M0SA31_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21900_0011e-111(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-24ERF family protein